Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2022 ATGGCGGATAAAGGCAGAGACGGCGGCCACTCGAGTTTACTCGACGGGAAGTACGAATTAGGCCGTCTTCTAGGGCATGGAACCTTCGCTAAGGTTTATCATGCTCGGAATCTGCGAACGGGGAAGAGCGTCGCGATGAAAGTGGTTGGGAAGGAGAAGATCATCAAAGTCGGCATGACGGAGCAGATCAAGAGAGAAATCTCTGTGATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTTCATGAGGTGATGGCGAGTAAATCGAAGATCTATTTCGCGATGGAGTTCGTTAGAGGCGGTGAACTGTTCTCCAAAATCGCGAAAGGTCGGTTGCGAGAGGATGTGGCTAGGGTTTACTTTCAGCAATTAATCTCTGCAATCGATTTCTGCCATAGCCGTGGAGTTTACCACCGTGATCTGAAACCGGAAAACCTCCTACTCGACGAAGACGGTAACCTCAAGGTCACCGACTTCGGCCTCACCGCCTTCTCAGAGCACTTGAAGCAAGACGGATTGTTGCATACAACGTGTGGAACTCCGGCGTACGTCGCGCCGGAGGTCATCGGAAAGCAAGGATACGACGGCGCGAAGGCCGATCTGTGGTCTTGTGGAGTCATTCTTTACGTTCTTCTCGCCGGATATCTTCCATTCCAGGATGACAACATGGTGGCGATGTACCGGAAGATTTACAGAGGCGACTTCAAGTGTCCGCCGTGGTTCTCTCCCGAAGCCCGTCGGCTAATCACGAAGCTTCTAGATCCTAATCCAGTGACCAGAGTCGGTATCGCGAAGATTACATCGTCATCATGGTTCAAGAAATCGGTACCCAAGACTCTGAGTACGAAGGAGGAGCAAGAACAAACAGAGGAGAATTTCACGAAATCAAAGCCACCGGCGGAAACATTGAACGCGTTCCACATAATATCTCTATCGGAAGGTTTTGATCTGTCGCCGTTGTTCGAGGAGAAGAAAAGGGAGGAGAAAGAGGAGATGAGATTCGCGACTTCGTCGCCGGCGAGCAGTGTGATATCGAAGCTTGAGGAAGTGGCGAAGTCAGTGAAGTTCGATGTGAAGAAGAGCGAATCGTGGGTTCGATTGCAGGGGCAAGAGAAAGGGAGAAAGGGGAAACTGACGATCGCGGCGGATATCTTTGCGATGACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGACAACGGAGATACTTTGGAGTATAATCAGTTCTGCAGGAAGGAGCTCCGGCCGGCATTGAAGGACATTGTTTGGACTTCTCCGACGGGAAACTCGACCCCAGCTTGA 1302 51.0 MADKGRDGGHSSLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMTEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMEFVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFKCPPWFSPEARRLITKLLDPNPVTRVGIAKITSSSWFKKSVPKTLSTKEEQEQTEENFTKSKPPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATSSPASSVISKLEEVAKSVKFDVKKSESWVRLQGQEKGRKGKLTIAADIFAMTPSFVVVEVKKDNGDTLEYNQFCRKELRPALKDIVWTSPTGNSTPA 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33685979 33687280 + CrPI670011_02g020220.1 Cre02g2022 491303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2022 433 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524(InterPro)
Cre02g2022 433 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2022 433 CDD CIPK_C 304 419 - -
Cre02g2022 433 FunFam Non-specific serine/threonine protein kinase 10 97 - -
Cre02g2022 433 SMART serkin_6 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2022 433 Gene3D Kinase associated domain 1, KA1 298 424 - -
Cre02g2022 433 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165(InterPro)
Cre02g2022 433 Gene3D Transferase(Phosphotransferase) domain 1 98 297 - -
Cre02g2022 433 FunFam Non-specific serine/threonine protein kinase 9 298 - -
Cre02g2022 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g2022 433 Pfam NAF domain 301 360 IPR004041 GO:0007165(InterPro)
Cre02g2022 433 SUPERFAMILY Protein kinase-like (PK-like) 15 291 IPR011009 -
Cre02g2022 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 416 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cre02g2022 433 CDD STKc_SnRK3 17 271 - -
Cre02g2022 433 Gene3D Phosphorylase Kinase; domain 1 13 97 - -
Cre02g2022 433 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2022 433 FunFam Non-specific serine/threonine protein kinase 282 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2022 Cre-Chr2:33685979 Cre06g2099 Cre-Chr6:28784355 6.80E-213 dispersed
Cre02g2022 Cre-Chr2:33685979 Cre05g0523 Cre-Chr5:4638670 3.90E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63884 PF00069 Pkinase 8.30E-73 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2022 - - - 0.0