Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2023 ATGGCTTCCTCACTCACTTCTTTGTTCATTTCTCGCCGGACTGATATGAGACTCACCAACTCCCTCCCGGACCTCCATAGCCACCGCCGTAACCACCCGCCGGAGACCGAAGCCTCTCAACTCCATCACCACCAACTTCAGACCTCCCTCTTCCATCCCTCTTCCTTCTCTTCCGACGATTTCCTCGACCAAATCCTCTCCGCCGCCCCTCCTCCCTGGGAACTCCCCGCCGGCCTCCCAAATCCTCACTCCGACCTCCCTCCCCAACCACTTCCGTCATCTAATCCCGACAATGTCGCGTTTCAGATCGGCGACACAACTCCGGCGGCCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTGCTCATGTCGAGAGGAATCACCACTGCCGATGATTCCGGTCTCCTTCCAATGCCTGGTAACGACGTCGTTGAAATAGAAGACTCTTCGTCTTTCAAATGCCCTAATCCGATTGATCACGGTTCCATCATTCCCTCTCTCTTCAACGAATTCGCCGGATTTCTGAACGCCTCCGGTTCCGGCCATAACCAGAATCAATCTCAGGGGAACTCAAACTCTCAGAAACAGAACTTCGGAGCTCCGGTATCAGTCAGCAGTCCACCTCCGGCAGGTCCTAACTCCGGCGTTGGTGCTGCACCACCGGCTCAGCCGCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACTGATCCTCATAGTATAGCAGAAAGATTACGAAGAGAGCGAATTGCGGAGAGAATGAAAGCACTACAAGAACTGGTTCCCAACGCCAACAAGACAGACAAGGCTTCAATGCTGGATGAGATCATAGACTATGTAAAGTTTCTCCAGCTTCAAGTCAAAGTTCTGAGTGTCAGCAGGTTGGGCGGTGCTACTGCAGCCATGCCTTCCCTTCAACCTGATCTTTCCACTGAGGGTGGCACTGAGTGCAACCAGTCCAACGGAACCGGTGGGGCCGGCGGACAGGCTTCAGCCGAAGCTCCGTCGAGTAACGACGCGATGACGGTGACGGAACATCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTTTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCCGCCGCCACGTGTCACAGCCGCCCAACTACGACGTCGAAGGTCAGAGGAGATGCTCCCACCTCTCCTAGTCTGTCGGCGTTGACCGTTCAGTCAACTACCTTGGGTAACGGCACGGTGGACAGAACCGTCAGAGACTCCGTCTCCGTTTCACGGCCGCCGTGA 1302 55.61 MASSLTSLFISRRTDMRLTNSLPDLHSHRRNHPPETEASQLHHHQLQTSLFHPSSFSSDDFLDQILSAAPPPWELPAGLPNPHSDLPPQPLPSSNPDNVAFQIGDTTPAAKMAMALLQQQLLMSRGITTADDSGLLPMPGNDVVEIEDSSSFKCPNPIDHGSIIPSLFNEFAGFLNASGSGHNQNQSQGNSNSQKQNFGAPVSVSSPPPAGPNSGVGAAPPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLQPDLSTEGGTECNQSNGTGGAGGQASAEAPSSNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPTTTSKVRGDAPTSPSLSALTVQSTTLGNGTVDRTVRDSVSVSRPP 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33718261 33724033 - CrPI670011_02g020230.1 Cre02g2023 491304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2023 433 MobiDBLite consensus disorder prediction 178 203 - -
Cre02g2023 433 Pfam Helix-loop-helix DNA-binding domain 239 284 IPR011598 GO:0046983(InterPro)
Cre02g2023 433 MobiDBLite consensus disorder prediction 178 242 - -
Cre02g2023 433 MobiDBLite consensus disorder prediction 73 93 - -
Cre02g2023 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 292 IPR036638 GO:0046983(InterPro)
Cre02g2023 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983(InterPro)
Cre02g2023 433 SMART finulus 240 289 IPR011598 GO:0046983(InterPro)
Cre02g2023 433 MobiDBLite consensus disorder prediction 22 44 - -
Cre02g2023 433 MobiDBLite consensus disorder prediction 387 433 - -
Cre02g2023 433 Gene3D - 229 291 IPR036638 GO:0046983(InterPro)
Cre02g2023 433 MobiDBLite consensus disorder prediction 22 39 - -
Cre02g2023 433 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 38 378 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cre02g2023 433 FunFam Transcription factor bHLH66 231 296 - -
Cre02g2023 433 MobiDBLite consensus disorder prediction 304 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2023 Cre-Chr2:33718261 Cre09g0707 Cre-Chr9:6830245 2.00E-42 dispersed
Cre10g0804 Cre-Chr10:8059872 Cre02g2023 Cre-Chr2:33718261 1.60E-07 dispersed
Cre06g2093 Cre-Chr6:28704313 Cre02g2023 Cre-Chr2:33718261 1.00E-80 transposed
Cre07g0390 Cre-Chr7:1632252 Cre02g2023 Cre-Chr2:33718261 2.20E-16 transposed
Cre02g2023 Cre-Chr2:33718261 Cre04g1855 Cre-Chr4:36242114 1.60E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53192 PF00010 HLH 1.60E-09 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2023 - - - 0.0