Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2032 ATGTGTGTGACGGATGCAGAGCAGGTTGGGACTGAGAGACCAACTTCTGGGGTTAATAATACCAAGCCATGGCCAATACATTGTGAATTTTTGCAGAATCAGATGGGGAATCCTGATAAGGAGCCTGCTCTAACTGGAACTAGCGACCGAACTCGCTCTGGGAATTCTTTTCCTCTAGAAAGCATATCTGAGGATGCTGCAGTTATAGACAGGAAAGAGAACCCATCTACTTTTGTTCCAGCTCTTAGATCAGGAGAATGGTCTGACATCGGAAAGCGTCCTTATATGGAAGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTTGGCTGTAGCTTTCTTAATGAGGAAGCTGTCTCCTTCTATGGTGTATTTGACGGTCATGGAGGAAAAGGCGCTGCACAGTTTGTTCGTGACCACTTGCCAAGAGTCATTGTTGAAGATTCTGACTTTCCTTTAGAACTTGAAAAAGTCGTCACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCTTGAAACATCTTTATCTTCTGGCACAACTGCACTGACTGCAATGATATTTGGAAGGTCTTTGCTTGTAGCAAATGCTGGCGACTGCCGAGCAGTACTGTCAAGACAAGGATGTGCAGTAGAAATGTCCAAAGACCACAGGCCATGCTGCACAAAAGAAAGAAAGCGAATCGAGGCCTTGGGCGGATTCATTGATGATGATTACCTAAACGGCCTGCTCGGTGTTACACGTGCGATAGGAGATTGGCATCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGTGGACCATTAAGTGCAGAACCTGAACTTAGATTAATGACATTGACAAAGGAAGATGAGTTCTTGATCATAGGTAGCGATGGAATATGGGACGTCTTCACGAGTCAAAATGCTATTGATTTTGCTCGGAGGAGGCTCCAAGAGCACAATGATGTGAAAATTTGCTGCAAGGAAATAGTAGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTGTTGGTTAGCTTTCATTTGGAACCTCCTCCACCTGTAGTTTTTCAAAGGCCAAGATTTAGAAGAAGCATTTCTGCTGAGGGACTTCAGAACCTCAAATTTCTTCTAGAAGGATAG 1146 43.63 MCVTDAEQVGTERPTSGVNNTKPWPIHCEFLQNQMGNPDKEPALTGTSDRTRSGNSFPLESISEDAAVIDRKENPSTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAVEMSKDHRPCCTKERKRIEALGGFIDDDYLNGLLGVTRAIGDWHLEGMKEMSERGGPLSAEPELRLMTLTKEDEFLIIGSDGIWDVFTSQNAIDFARRRLQEHNDVKICCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEGLQNLKFLLEG 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33842707 33847758 + CrPI670011_02g020320.1 Cre02g2032 491313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2032 381 CDD PP2Cc 83 348 IPR001932 -
Cre02g2032 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169(InterPro)
Cre02g2032 381 PANTHER PROTEIN PHOSPHATASE 2C 73 348 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Cre02g2032 381 FunFam Probable protein phosphatase 2C 22 67 351 - -
Cre02g2032 381 Pfam Protein phosphatase 2C 95 340 IPR001932 -
Cre02g2032 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
Cre02g2032 381 Gene3D - 66 351 IPR036457 -
Cre02g2032 381 MobiDBLite consensus disorder prediction 1 23 - -
Cre02g2032 381 SMART PP2C_4 73 346 IPR001932 -
Cre02g2032 381 MobiDBLite consensus disorder prediction 35 57 - -
Cre02g2032 381 SUPERFAMILY PP2C-like 73 349 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2032 Cre-Chr2:33842707 Cre11g2280 Cre-Chr11:34511999 1.20E-88 dispersed
Cre02g2032 Cre-Chr2:33842707 Cre09g0461 Cre-Chr9:4379641 7.90E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53194 PF00481 PP2C 7.10E-67 CL0238 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2032 K14803 - csv:101210349 727.628