Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2041 ATGAGGTGGAATTCTTTCTACACCAAAGCCTCTAAGGCTTTTCATGACCATCCTTCCATCTCCAAGCTTCTCATTGTTTTCACTATCAGTGGAGGTGGACTGGTAGCAGCTACTAATGGCAGATCTCGTTATCATTCTGCATATGCTGATGCAGTCCAACAAGATGGTGACTGCAAGAAGAAGAAAGTGGTGGTGCTTGGAACAGGATGGGCTGGGACCAGTTTTTTGAAGAATCTCAAGAGCTCATCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCTTTCACCCCTTTGCTACCTAGTGTCACCTGTGGGACGGTTGAAGCACGCAGCATCGTCGAACCGATTCGTAGTATTACAAGGAAGAAAGGTCTGAATATTGAATTTAGGGAAGCTGAGTGCTATAAGATTGATGCAGAGAAGAAAAAGGTGTTCTGTCGATCAAGTCAAGACACAAATTTGGGTGGCAGAGAAGAATTTTCTGTTGACTATGACTATCTGATTATAGCTATGGGAGCTAAATCCAACACTTTCAACACGCCTGGAGTTGAGGAAAATGCTCACTTCTTGAAGGGAGTGGAAGATGCTCAGAGGATTCGTCAGACCGTAATCGATTGTTTCGAGCGAGCCAGCCTTCCAAATCTAAGTGAAGAAGAGAAGAAGAGAACTCTTCACTTTGTAATAGTTGGAGGTGGCCCAACAGGGGTGGAATTTGCTGCAGAGCTTCATGACTTTGCAGTTGAGGATTTAGCAGGGCTGTATCCTTCATTGAAAGACTATGTAAAAATAACCCTGTTAGAGGCAGGAGATAATATTTTGAACATGTTTGACAAGAGGATTACCGCCTTTGCTGAAGAAAAATTTCAAAGAGATGGGATTGAAGTAAAAACTGGTTCCATGGTTGTAAAAGTAACTGATAAGGAAATCTCCACAAAAGAAAGAGCAACCGGTGAATTTGTGTCTGTTCCTTATGGAATGGTTGTCTGGTCTACCGGCATCGGCCCTCGTCCTCAAGTTGTTGATTTCATGAAGCAGATTGGTCAGACTAACAGAAGAGCTTTGGCAACTGATGAGTGGCTAAGGGTTGAAGGATGTGATGGTGTCTATGCTCTTGGTGATTGTGCCACTGTAAATCAAAGAAGAGTCATGGAAGATATTGCAGTAATATTCTGCAAGGCAGACAAGGACAAGTCAGGAACTTTAGCCCTGCAAGAGTTTCAAGAAGTGGTAGATGATATTTGCGAGAGGTACCCTCAAGTAGAGATCTATCTGAAGAAGAAGCAGATGAAGAACTTTGCAGCTTTGTTGAAGAAGACGCAATCCGACGCACAGAAACAGTCGACCGAACTGGATATTGAAAGCTTTAAGTCTTTACTTTCTGAAGTCGATTCTCAGATGAAAAATCTCCCTGCTACTGCTCAAGTTGCTGCTCAACAAGGTGAATATCTTGCAAGCTGCTTCAACCGGATGGAGCAGTGTGAAAAGTACCCTGAAGGCCCTCTCCGATTTCGAGGGACGGGACGCCACAGGTTTCACCCTTTCAGGTATAAGCATTTTGGGCAGTTTGCTCCTCTTGGGGGAGAACAAACTGCAGCTCAACTTCCTGGAGATTGGATCTCAATTGGTCATAGCACCCAGTGGCTTTGGTACTCTGTGTATGCCAGCAAGCTAGTAAGTTGGCGCACAAGGATTCTGGTCATGTCAGATTGGGGTAGAAGATTCATATTTGGCAGGGATTCAAGCAGAATCTGA 1758 43.8 MRWNSFYTKASKAFHDHPSISKLLIVFTISGGGLVAATNGRSRYHSAYADAVQQDGDCKKKKVVVLGTGWAGTSFLKNLKSSSYDVHVISPHNYFAFTPLLPSVTCGTVEARSIVEPIRSITRKKGLNIEFREAECYKIDAEKKKVFCRSSQDTNLGGREEFSVDYDYLIIAMGAKSNTFNTPGVEENAHFLKGVEDAQRIRQTVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAVEDLAGLYPSLKDYVKITLLEAGDNILNMFDKRITAFAEEKFQRDGIEVKTGSMVVKVTDKEISTKERATGEFVSVPYGMVVWSTGIGPRPQVVDFMKQIGQTNRRALATDEWLRVEGCDGVYALGDCATVNQRRVMEDIAVIFCKADKDKSGTLALQEFQEVVDDICERYPQVEIYLKKKQMKNFAALLKKTQSDAQKQSTELDIESFKSLLSEVDSQMKNLPATAQVAAQQGEYLASCFNRMEQCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYASKLVSWRTRILVMSDWGRRFIFGRDSSRI 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33910252 33913247 - CrPI670011_02g020410.1 Cre02g2041 491322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2041 585 SUPERFAMILY EF-hand 341 462 IPR011992 -
Cre02g2041 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 365 383 - -
Cre02g2041 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 223 247 - -
Cre02g2041 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 62 84 - -
Cre02g2041 585 PANTHER NADH DEHYDROGENASE 47 585 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Cre02g2041 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 429 584 - -
Cre02g2041 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 184 - -
Cre02g2041 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 355 377 - -
Cre02g2041 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 227 245 - -
Cre02g2041 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Cre02g2041 585 Pfam Pyridine nucleotide-disulphide oxidoreductase 61 382 IPR023753 GO:0016491(InterPro)
Cre02g2041 585 Pfam NDH2 C-terminal domain 520 581 IPR054585 -
Cre02g2041 585 Gene3D - 461 575 - -
Cre02g2041 585 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509(InterPro)
Cre02g2041 585 SUPERFAMILY FAD/NAD(P)-binding domain 60 279 IPR036188 -
Cre02g2041 585 SUPERFAMILY FAD/NAD(P)-binding domain 221 380 IPR036188 -
Cre02g2041 585 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
Cre02g2041 585 Gene3D - 51 436 - -
Cre02g2041 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 51 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2041 Cre-Chr2:33910252 Cre03g0841 Cre-Chr3:7160906 4.80E-262 dispersed
Cre05g2365 Cre-Chr5:35230795 Cre02g2041 Cre-Chr2:33910252 7.80E-08 transposed
Cre02g0470 Cre-Chr2:1909579 Cre02g2041 Cre-Chr2:33910252 6.20E-230 wgd
Cre02g2041 Cre-Chr2:33910252 Cre04g1878 Cre-Chr4:36423969 1.60E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2041 K03885 - csv:101209855 1126.69