Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2065 ATGCAGCTCCTCCTCCGCCGCCGCAGTTTTCGGCTCATTAGAGCTTTGTTCTGTGCCGCGGCTGTGCTTGAGTGGTTCACGGCGGCAGCTCAGCTCCAACACCGTGTACCAAATCTACATTGGCTTCCAGCCACCGCCACGTGGTATGGGAGTCCCGAGGGAGACGGTAGCGACGGTGGAGCATGTGGGTATGGTAATTTAGTGGATGTGAAGCCTCTAAAGGCCAGAGTTGGGGCTGTGAGTCCAGTTTTGTTCAGAAATGGTGAAGGGTGTGGAGCCTGTTACAAAGTGAAGTGTTTAGACCAGAACATTTGCTCTAGACGAGCAGTGACTATAATCGTCACCGATGAGTGCCCCGGTGGGTATTGTTCCAATGGCAATACTCACTTCGATCTCAGCGGCGCCGCTTTTGGCCGTATGGCCATCGCCGGCGAAGGTGGGCAGCTCAGAAACCGAGGCGAAATCCCAGTAATTTACCGACGAACTCCGTGTAAGTACCCAGGCAAGAACATTGCCTTCCATGTCAATGAAGGCTCGACAGATTACTGGCTCTCACTCTTAGTTGAATTCGAGGATGGAGATGGAGACATCGGTGCAATGCAAATAAAAGAAACAAATTCAGGGGAGTGGCTGGATATGAACCATCTATGGGGGGCAAATTGGTGCATAATTGGTGGGCCATTAAAGGGCCCATTCTCAGTGAGATTAACAACTTTATCTACAGGAAGAACCCTCTCAGCAAGGGATATAATCCCAAGGAATTGGTCTCCCAAAGCCACTTACACTTCCCGCCTTAATTTCTTCTCTTGA 810 50.74 MQLLLRRRSFRLIRALFCAAAVLEWFTAAAQLQHRVPNLHWLPATATWYGSPEGDGSDGGACGYGNLVDVKPLKARVGAVSPVLFRNGEGCGACYKVKCLDQNICSRRAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAIAGEGGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDIGAMQIKETNSGEWLDMNHLWGANWCIIGGPLKGPFSVRLTTLSTGRTLSARDIIPRNWSPKATYTSRLNFFS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34143883 34145371 - CrPI670011_02g020650.1 Cre02g2065 491346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2065 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 169 IPR007112 -
Cre02g2065 269 PANTHER EXPANSIN-B3 25 267 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Cre02g2065 269 SUPERFAMILY PHL pollen allergen 169 263 IPR036749 -
Cre02g2065 269 Gene3D - 166 268 IPR036749 -
Cre02g2065 269 CDD DPBB_EXPB_N 41 164 - -
Cre02g2065 269 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576(InterPro)
Cre02g2065 269 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Cre02g2065 269 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576(InterPro)
Cre02g2065 269 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576(InterPro)
Cre02g2065 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576(InterPro)
Cre02g2065 269 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576(InterPro)
Cre02g2065 269 SMART dpbb_1 77 159 IPR007112 -
Cre02g2065 269 FunFam Beta-expansin 3 166 268 - -
Cre02g2065 269 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre02g2065 269 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre02g2065 269 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre02g2065 269 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre02g2065 269 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre02g2065 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cre02g2065 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 263 IPR007117 -
Cre02g2065 269 Gene3D - 27 165 IPR036908 -
Cre02g2065 269 Pfam Expansin C-terminal domain 171 252 IPR007117 -
Cre02g2065 269 SUPERFAMILY Barwin-like endoglucanases 40 168 IPR036908 -
Cre02g2065 269 Pfam Lytic transglycolase 79 157 IPR009009 -
Cre02g2065 269 FunFam Expansin B3 27 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2065 Cre-Chr2:34143883 Cre05g0092 Cre-Chr5:1144138 7.30E-64 dispersed
Cre02g2065 Cre-Chr2:34143883 Cre07g0659 Cre-Chr7:4323212 1.90E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2065 K20628 - csv:101202998 512.686