Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2077 ATGGGCTGCATCTGTTCTAAGGTTTTAGCTGATGAGTGTAGTGACAATGAACATGATACCTCCAAAAGAGCTCATTCCCCAATTAAACACCTCTCTGAATTAAAAACATCAAGATCTGGCTCTCCCACATCTGAGAAGATTTGGGAGAAAGATAGGCTGAATTGTAGTGATGTTACGGTTATGTTGTTCGATACAACGGCGAATGGTTCTCTACGCTCACACGGCAAGCTTTCTAATGAGAAGAAGAGCACAGACATCCCTGATGTCACCATTATCAACCATCCATTTATGGGAAAGATTCCGAAGGCTACTGAGGCCGAGCAAGTCGCTGCCGGGTGGCCGAGTTGGCTGGCTGTGGTGGCTGGTGAAGCTATCAAAGGCTGGTTGCCAAAACGTGCAAATAACTTCATCAAGTTAGAGAAAATTGGCCAAGGAACTTATAGCAGTGTGTATAAAGCTCGGGATATCATTCAAGATAAAGTTGTGGCCTTGAAAAGGATCAGATTTGACAATCAAGATGCTGAGAGTATCAAGTTTATCGCAAGGGAAATCCTTGTTTTGAGAAGGCTTGATCATCCAAATATAGTTAAGTTGGAAGGTTTGATCACATCACAAACATCATGTACTATGTACCTTGTTTTTGAATATATGGAACATGATCTTACCGGACTCGCATCACGGCCTGGCGCGTCGTTCACCGAACCACAGATGAAGTGTTACATGAAGCAACTTTTGAGTGGACTTGATCATTGTCACAGTAATGGGGTTCTTCATAGAGACATAAAGGGCTCAAATCTTCTTATTGACAACAATGGCATTTTGAAGATAGCAGATTTTGGGTTGGCTGTTTTCTTTGATTCACATTCAACAGTTCCAATGACGAGCCGTGTAATAACTCTCTGGTATCGACCACCAGAACTTTTACTTGGAGCGTCTAAATATGGAGTTGAAGTTGATTTATGGAGTGCTGGCTGCATTCTAGGAGAGTTATATACTGGCAAGCCCATCTTACCAGGGAAAACAGAGGTTGAACAACTACATAAAATATTTAAGCTATGTGGTTCCCCTTCCAAGGACTATTGGAAAAAATTGCATTTGAAGCAATCAACAAGCATGAAACCTCCACAGTCATATGAAAGATGTCTTCGAGAAAGATATAACGATATTCCTCGTGCTGCTGTTGACCTTATGGACACTTTGTTATCTATAGATCCTACAGGGCGAGGAACTGCTGCTTCCGCACTCGACAGTGAGTTCTTTACAACAAGGCCCTTACCAAGCGATCCTTCAAATTTGCCAAAATACCCTCCAAGCAAAGAGATCGATTCAAAACTGCGTGAAGAGGAAGCAAGAAGGCAACAAGGAGTAGGTGGTGGGAGAAGCCAAATAGTCTACCAAGAAGCAAAAGGACTGAAGCAATGTAGAGTAGTTCCTGCTGCAAAGGCTAATGCTGAGTTGGTTATTTCATTACTGAGAAAACAAAGTCGTTCGAGCGCGAAGTACCGGAATGAAACGTATTCTTATGGTTTGGTGTCGAAAAGAACCTCAAATTCAGGACCTATAACTCAGGGACCGAGATTTACAAACAACAAAAAGGAACCAAAACATGTTTCTATGGTTTCCAGTGAGTGTTTAATATCATCTGGTCCTATTGAATTTGTTTCTTACAAATATGTCAGAGAAAGAAATGAAGTTTCAAAGCCAGAATCAATGAGCCAAGACAAAAATCTTCCTCTTCTATCCAGTTCTGCTGAAGAGTCATCCATCAAAAAGCTAAACGAAGGCAAAGTTGATATGAAGAAAGTTACAAATTCTTGTCAGTTGGAAGATTCAAAGGCCTCAGCTCTAATAGTTGGCTAA 1860 41.29 MGCICSKVLADECSDNEHDTSKRAHSPIKHLSELKTSRSGSPTSEKIWEKDRLNCSDVTVMLFDTTANGSLRSHGKLSNEKKSTDIPDVTIINHPFMGKIPKATEAEQVAAGWPSWLAVVAGEAIKGWLPKRANNFIKLEKIGQGTYSSVYKARDIIQDKVVALKRIRFDNQDAESIKFIAREILVLRRLDHPNIVKLEGLITSQTSCTMYLVFEYMEHDLTGLASRPGASFTEPQMKCYMKQLLSGLDHCHSNGVLHRDIKGSNLLIDNNGILKIADFGLAVFFDSHSTVPMTSRVITLWYRPPELLLGASKYGVEVDLWSAGCILGELYTGKPILPGKTEVEQLHKIFKLCGSPSKDYWKKLHLKQSTSMKPPQSYERCLRERYNDIPRAAVDLMDTLLSIDPTGRGTAASALDSEFFTTRPLPSDPSNLPKYPPSKEIDSKLREEEARRQQGVGGGRSQIVYQEAKGLKQCRVVPAAKANAELVISLLRKQSRSSAKYRNETYSYGLVSKRTSNSGPITQGPRFTNNKKEPKHVSMVSSECLISSGPIEFVSYKYVRERNEVSKPESMSQDKNLPLLSSSAEESSIKKLNEGKVDMKKVTNSCQLEDSKASALIVG 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34266371 34268866 + CrPI670011_02g020770.1 Cre02g2077 491358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2077 619 Pfam Protein kinase domain 138 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2077 619 MobiDBLite consensus disorder prediction 420 456 - -
Cre02g2077 619 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524(InterPro)
Cre02g2077 619 ProSiteProfiles Protein kinase domain profile. 136 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2077 619 PANTHER CELL DIVISION PROTEIN KINASE 136 420 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cre02g2077 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g2077 619 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Cre02g2077 619 FunFam probable serine/threonine-protein kinase At1g54610 219 460 - -
Cre02g2077 619 MobiDBLite consensus disorder prediction 439 454 - -
Cre02g2077 619 SMART serkin_6 136 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2077 619 MobiDBLite consensus disorder prediction 570 585 - -
Cre02g2077 619 SUPERFAMILY Protein kinase-like (PK-like) 131 427 IPR011009 -
Cre02g2077 619 CDD STKc_CDK9_like 136 420 - -
Cre02g2077 619 Gene3D Transferase(Phosphotransferase) domain 1 219 458 - -
Cre02g2077 619 MobiDBLite consensus disorder prediction 565 585 - -
Cre02g2077 619 FunFam probable serine/threonine-protein kinase At1g54610 123 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2077 Cre-Chr2:34266371 Cre05g1117 Cre-Chr5:10515345 2.40E-174 dispersed
Cre02g2077 Cre-Chr2:34266371 Cre02g2078 Cre-Chr2:34274779 1.20E-167 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63885 PF00069 Pkinase 9.20E-69 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2077 - - - 0.0