Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g2078 | ATGTTCTTTCTTGATTCTGGAAGATTGGACTTTAGAAATTCGTTCCAGTGTTTTTTCTCAACGTCTGCGGTTTGTGGTTCAAAATCCCGTGTTTTGAAAGTCTTCTCTGAATTGGTTGGGTATATAGGAAGGTTTGGTTTCTGGGCTGCAAAAATGGGTTGTCAGTGTTCCAAGCCTTCTATTGATGAAGATGGCAAAAACAGAGCCTCTGAGAAATTTCCTTCACGAAAGGGTTCACGAGATAATTTATTAAAAAAAGGAGAGGATATGCGATTGAATTCTGTGAAAAGAGACGAAGATGTTCGAATAAATTCCTCACAGAGAGCAGATAGTATTCGATCAAAGGTGAAAACGGATGGTGTTGACATGAAACTTGCTTATTTGGACAAGAGAGTCAACGGCTCTAACAGGGTACACGATGATCAAATTGAAAAAAAGAAGAGGGAGAGGTTGGAAGCTGCAATTTCTGCTAATTATCCTGGAAAAGGAAGCATTCCAAAGGCTATGGAAGCGGAGCAAGTTGCAGCTGGTTGGCCAAGCTGGCTCTCCTCTGTGGCCGGTGAAGCGCTCGAGGGATGGCTGCCACGGAGAGCCGAAACTTTCGAGAAACTCGACAAGATAGGACAAGGCACATATAGTAGTGTTTACAAGGCTCGTGATATCATTCAAAATAAACTAGTCGCTCTAAAGCGAGTTCGATTCGATAATCTCGATGTGGAGAGTGTCAAGTTTATGGCCCGGGAAATCCTTATCCTGCGTAGGCTTGATCATCCAAATGTTATAAAATTGGAAGGCTTGATTACATCACCGCGATCATGTAGCTTGTACCTCGTTTTTGAGTATATGGAGCATGACCTTACAGGCCTTGCATCTCGGCCTGGGGTCAAGTTCAGCGAACCACAGGTTAAATGCTATATGCAACAACTTCTGAGGGGGCTTGATTATTGCCACAGTCGTGGTGTCCTCCACCGCGATATAAAGGGTTCAAATCTCCTAATTGACGACAATGGCATCTTGAAGATTGCAGATTTTGGATTAGCAAGCCCTTTTGACCCCCATAATCAAGTTCCCTTAACAAGCCGTGTAGTGACTCTATGGTACCGACCACCTGAACTTCTGCTTGGAGCTTCTTATTATGGGGTTGCAGTGGACCTGTGGAGTACGGGTTGCATACTAGCGGAGCTATATTCTGGGAAGCCTATCTTACCTGGAAAAACTGAGGTCGAACAGTTGCACAAGATATTTAAACTTTGTGGGTCGCCGCCTGAGAATTATTGGAAGAAATTGCAATTACCTCATTCAACTGGATTTAAGACGGCTCAGCCATACCGACGTTGTATCGGGGAAATGCTCAAGGATTTCCCACCATCTGCGGTGGCTCTTGTGGATAAGTTGCTTTCTATAGATCCTGCTCATCGGGGAACAGCAGCTGCTGCTCTAAAGAGCGAGTTTTTTACGACTAAACCTCTTGCTTGCGAGCCTACGAGTCTGCCCAAATATCCTCCCAGCAAAGAGATTGATGCAAAATTCCCTGGCTGCAGAAGGCAGTCAAGAGCTGAGGGCAAAGACCCTAAAGATTATGTGGAAGGGAGGCGACCTAAAGAAGCTCACATTAATCTTTCTCTGAATGCTAAGGATGAAGTAAACATGTCAATGCAGAAAAGGCAAGGTTATTCAAGTTTTAAGGGCCGGGGCGGAGTGTTGAATCCGCATGGGGATGAGACAGTTTCTGGTTTTTTGATTCCTCCGCCCAAACAAAATCAATCTGTCACAGAAATTTGCTCAGATACAGGCCGGATTTCGCATTCAGGACCGCTAATTAGCAAACCAGATTGGATGAAATCTAGGAAGCAACTCGATGACCATTCGATGGCGCTCGATGGATCCAATCTCTCAGTATTATCCCGTTTAGTAGCAACGAGGTCTAATATATCTGATCATCCCTATGATAGACCAGGTCCATCACAATCAGAAGTAGGCAGATTGCCTGACTTCGTCAGGGATTCAGAGTCAACGAGAAAGCAGGACCGAATATTTTATACACACCGAGTTGCGGATTCATATCGAATAGAGAACGAAAAAGTTTGTGCTAAAGAACAGTCCCTGCTTGCTTATGGGACAGACATGAACAAGCTTTATACTTCTGGTCCAATCCTTGGTCCATCAAACAACTTAGATAAAATTCTGAAAGAGCGAGACCGTCAGATTCAAGAATACGCTCGACAAGCACGACACGGTAAAGCTGCTAACAGTCAGTTAAAGAGTTCAAGAGCAACAACTGGAAAACATCTGATGTCAAGCCATGGAATCGACGTGTTCCACGAACAACCAGACCTCCAAATCGAACGGAGAAAAATCAAGCTACTCGTCGGGAATCGGAGCTGCGACGGAAGTTTTGAAATGTCCGACATATCGGCTAGTTTCATCGACATATTTCCAGAAGAATCCGACAACCCACCGGAGAGTTCATATGATTCTAGCGAAGAAGGAGATCAGAATGGAGAAACTTCTTCAATCGTTAAAGAAAACAGAGCTTTCTGGAAATCGCAAAAAGAAGTTCTTCAGGCGACTTTGAGAAGAACGAATTCGATTGAGTTAGAAATCCGGCAAGCAACGAAAAATGCACTCAGAGAAATGGATTTCAAGTCCATTCAATGCGGTTGCCGGAGAGCGGCGGAAGTTGCGGTGTGTCGGGAGTGCGTACAGAGAGAAGTATGCAATCATTTGAGAAACGCCGGTTACAATTGCGCCGTTTGTAAGTCTAAATGGAAAAGCTCACCGGAAATTCCATCAGGGGAGCACAGTTATTTGGAAGTGGTCGACGATTGTGATCCGAATGATAGAGTGATAATCGAGCTGAATTTTAGAGCGGAATTCGAAATAGCTAGAGCGAGTGAAGAGTACAAGCGATTGGTGAGACGGTTGCCGGAAGTATTCATCGGAAAAGACGAGAAGCTTCGAGAATTGATAAGAATTCTGTGCAATGCGGCGGAGAAGTGCATGAAGGAAAAGAAAATGCATTTGGGGCCATGGAGGAAGTACAGATACATGCAGGCCAAGTGGTTAGGGAAGTGCGAGAGGTCGACGCCGGCGCCGGTGCCGCTGCCAGTGGGATTATCCGGGCGGCCGCCGAAGGCAAGGGCCTCGATGCTTACTTATGATCTGCTGCAGAGCTTGCCGGCGGCCATGGTTAGCTCTGCTTCTGCGGTTGAAGTGGTGTGA | 3222 | 45.47 | MFFLDSGRLDFRNSFQCFFSTSAVCGSKSRVLKVFSELVGYIGRFGFWAAKMGCQCSKPSIDEDGKNRASEKFPSRKGSRDNLLKKGEDMRLNSVKRDEDVRINSSQRADSIRSKVKTDGVDMKLAYLDKRVNGSNRVHDDQIEKKKRERLEAAISANYPGKGSIPKAMEAEQVAAGWPSWLSSVAGEALEGWLPRRAETFEKLDKIGQGTYSSVYKARDIIQNKLVALKRVRFDNLDVESVKFMAREILILRRLDHPNVIKLEGLITSPRSCSLYLVFEYMEHDLTGLASRPGVKFSEPQVKCYMQQLLRGLDYCHSRGVLHRDIKGSNLLIDDNGILKIADFGLASPFDPHNQVPLTSRVVTLWYRPPELLLGASYYGVAVDLWSTGCILAELYSGKPILPGKTEVEQLHKIFKLCGSPPENYWKKLQLPHSTGFKTAQPYRRCIGEMLKDFPPSAVALVDKLLSIDPAHRGTAAAALKSEFFTTKPLACEPTSLPKYPPSKEIDAKFPGCRRQSRAEGKDPKDYVEGRRPKEAHINLSLNAKDEVNMSMQKRQGYSSFKGRGGVLNPHGDETVSGFLIPPPKQNQSVTEICSDTGRISHSGPLISKPDWMKSRKQLDDHSMALDGSNLSVLSRLVATRSNISDHPYDRPGPSQSEVGRLPDFVRDSESTRKQDRIFYTHRVADSYRIENEKVCAKEQSLLAYGTDMNKLYTSGPILGPSNNLDKILKERDRQIQEYARQARHGKAANSQLKSSRATTGKHLMSSHGIDVFHEQPDLQIERRKIKLLVGNRSCDGSFEMSDISASFIDIFPEESDNPPESSYDSSEEGDQNGETSSIVKENRAFWKSQKEVLQATLRRTNSIELEIRQATKNALREMDFKSIQCGCRRAAEVAVCRECVQREVCNHLRNAGYNCAVCKSKWKSSPEIPSGEHSYLEVVDDCDPNDRVIIELNFRAEFEIARASEEYKRLVRRLPEVFIGKDEKLRELIRILCNAAEKCMKEKKMHLGPWRKYRYMQAKWLGKCERSTPAPVPLPVGLSGRPPKARASMLTYDLLQSLPAAMVSSASAVEVV | 1073 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 34274779 | 34282011 | + | CrPI670011_02g020780.1 | Cre02g2078 | 491359 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g2078 | 1073 | MobiDBLite | consensus disorder prediction | 60 | 82 | - | - | |
Cre02g2078 | 1073 | MobiDBLite | consensus disorder prediction | 61 | 82 | - | - | |
Cre02g2078 | 1073 | PANTHER | CELL DIVISION PROTEIN KINASE | 200 | 485 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Cre02g2078 | 1073 | Gene3D | Transferase(Phosphotransferase) domain 1 | 284 | 522 | - | - | |
Cre02g2078 | 1073 | CDD | STKc_CDK9_like | 201 | 485 | - | - | |
Cre02g2078 | 1073 | MobiDBLite | consensus disorder prediction | 819 | 839 | - | - | |
Cre02g2078 | 1073 | ProSiteProfiles | Protein kinase domain profile. | 201 | 485 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre02g2078 | 1073 | Pfam | PDDEXK-like family of unknown function | 809 | 1027 | IPR006502 | - | |
Cre02g2078 | 1073 | MobiDBLite | consensus disorder prediction | 644 | 669 | - | - | |
Cre02g2078 | 1073 | MobiDBLite | consensus disorder prediction | 815 | 839 | - | - | |
Cre02g2078 | 1073 | Gene3D | Phosphorylase Kinase; domain 1 | 188 | 283 | - | - | |
Cre02g2078 | 1073 | MobiDBLite | consensus disorder prediction | 508 | 529 | - | - | |
Cre02g2078 | 1073 | NCBIfam | uncharacterized plant-specific domain TIGR01615 | 903 | 1028 | IPR006502 | - | |
Cre02g2078 | 1073 | ProSitePatterns | Protein kinases ATP-binding region signature. | 207 | 230 | IPR017441 | GO:0005524(InterPro) | |
Cre02g2078 | 1073 | SUPERFAMILY | Protein kinase-like (PK-like) | 196 | 490 | IPR011009 | - | |
Cre02g2078 | 1073 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 321 | 333 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre02g2078 | 1073 | FunFam | probable serine/threonine-protein kinase At1g54610 | 188 | 283 | - | - | |
Cre02g2078 | 1073 | FunFam | probable serine/threonine-protein kinase At1g54610 | 284 | 523 | - | - | |
Cre02g2078 | 1073 | SMART | serkin_6 | 201 | 485 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre02g2078 | 1073 | MobiDBLite | consensus disorder prediction | 503 | 529 | - | - | |
Cre02g2078 | 1073 | Pfam | Protein kinase domain | 201 | 485 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2078 | Cre-Chr2:34274779 | Cre05g0708 | Cre-Chr5:6258340 | 3.00E-161 | dispersed | |
Cre06g1407 | Cre-Chr6:8299779 | Cre02g2078 | Cre-Chr2:34274779 | 1.20E-28 | dispersed | |
Cre07g0429 | Cre-Chr7:1980963 | Cre02g2078 | Cre-Chr2:34274779 | 5.40E-24 | dispersed | |
Cre02g2077 | Cre-Chr2:34266371 | Cre02g2078 | Cre-Chr2:34274779 | 1.20E-167 | tandem | |
Cre03g0899 | Cre-Chr3:7743727 | Cre02g2078 | Cre-Chr2:34274779 | 7.90E-72 | transposed | |
Cre05g1117 | Cre-Chr5:10515345 | Cre02g2078 | Cre-Chr2:34274779 | 3.20E-207 | transposed | |
Cre05g2344 | Cre-Chr5:35045280 | Cre02g2078 | Cre-Chr2:34274779 | 1.80E-60 | transposed | |
Cre07g0577 | Cre-Chr7:3536231 | Cre02g2078 | Cre-Chr2:34274779 | 2.30E-28 | transposed | |
Cre09g0812 | Cre-Chr9:8162667 | Cre02g2078 | Cre-Chr2:34274779 | 1.10E-26 | transposed | |
Cre02g2078 | Cre-Chr2:34274779 | Cre07g0640 | Cre-Chr7:4193075 | 3.30E-75 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
63886 | PF00069 | Pkinase | 2.20E-67 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g2078 | - | - | - | 0.0 |