Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2078 ATGTTCTTTCTTGATTCTGGAAGATTGGACTTTAGAAATTCGTTCCAGTGTTTTTTCTCAACGTCTGCGGTTTGTGGTTCAAAATCCCGTGTTTTGAAAGTCTTCTCTGAATTGGTTGGGTATATAGGAAGGTTTGGTTTCTGGGCTGCAAAAATGGGTTGTCAGTGTTCCAAGCCTTCTATTGATGAAGATGGCAAAAACAGAGCCTCTGAGAAATTTCCTTCACGAAAGGGTTCACGAGATAATTTATTAAAAAAAGGAGAGGATATGCGATTGAATTCTGTGAAAAGAGACGAAGATGTTCGAATAAATTCCTCACAGAGAGCAGATAGTATTCGATCAAAGGTGAAAACGGATGGTGTTGACATGAAACTTGCTTATTTGGACAAGAGAGTCAACGGCTCTAACAGGGTACACGATGATCAAATTGAAAAAAAGAAGAGGGAGAGGTTGGAAGCTGCAATTTCTGCTAATTATCCTGGAAAAGGAAGCATTCCAAAGGCTATGGAAGCGGAGCAAGTTGCAGCTGGTTGGCCAAGCTGGCTCTCCTCTGTGGCCGGTGAAGCGCTCGAGGGATGGCTGCCACGGAGAGCCGAAACTTTCGAGAAACTCGACAAGATAGGACAAGGCACATATAGTAGTGTTTACAAGGCTCGTGATATCATTCAAAATAAACTAGTCGCTCTAAAGCGAGTTCGATTCGATAATCTCGATGTGGAGAGTGTCAAGTTTATGGCCCGGGAAATCCTTATCCTGCGTAGGCTTGATCATCCAAATGTTATAAAATTGGAAGGCTTGATTACATCACCGCGATCATGTAGCTTGTACCTCGTTTTTGAGTATATGGAGCATGACCTTACAGGCCTTGCATCTCGGCCTGGGGTCAAGTTCAGCGAACCACAGGTTAAATGCTATATGCAACAACTTCTGAGGGGGCTTGATTATTGCCACAGTCGTGGTGTCCTCCACCGCGATATAAAGGGTTCAAATCTCCTAATTGACGACAATGGCATCTTGAAGATTGCAGATTTTGGATTAGCAAGCCCTTTTGACCCCCATAATCAAGTTCCCTTAACAAGCCGTGTAGTGACTCTATGGTACCGACCACCTGAACTTCTGCTTGGAGCTTCTTATTATGGGGTTGCAGTGGACCTGTGGAGTACGGGTTGCATACTAGCGGAGCTATATTCTGGGAAGCCTATCTTACCTGGAAAAACTGAGGTCGAACAGTTGCACAAGATATTTAAACTTTGTGGGTCGCCGCCTGAGAATTATTGGAAGAAATTGCAATTACCTCATTCAACTGGATTTAAGACGGCTCAGCCATACCGACGTTGTATCGGGGAAATGCTCAAGGATTTCCCACCATCTGCGGTGGCTCTTGTGGATAAGTTGCTTTCTATAGATCCTGCTCATCGGGGAACAGCAGCTGCTGCTCTAAAGAGCGAGTTTTTTACGACTAAACCTCTTGCTTGCGAGCCTACGAGTCTGCCCAAATATCCTCCCAGCAAAGAGATTGATGCAAAATTCCCTGGCTGCAGAAGGCAGTCAAGAGCTGAGGGCAAAGACCCTAAAGATTATGTGGAAGGGAGGCGACCTAAAGAAGCTCACATTAATCTTTCTCTGAATGCTAAGGATGAAGTAAACATGTCAATGCAGAAAAGGCAAGGTTATTCAAGTTTTAAGGGCCGGGGCGGAGTGTTGAATCCGCATGGGGATGAGACAGTTTCTGGTTTTTTGATTCCTCCGCCCAAACAAAATCAATCTGTCACAGAAATTTGCTCAGATACAGGCCGGATTTCGCATTCAGGACCGCTAATTAGCAAACCAGATTGGATGAAATCTAGGAAGCAACTCGATGACCATTCGATGGCGCTCGATGGATCCAATCTCTCAGTATTATCCCGTTTAGTAGCAACGAGGTCTAATATATCTGATCATCCCTATGATAGACCAGGTCCATCACAATCAGAAGTAGGCAGATTGCCTGACTTCGTCAGGGATTCAGAGTCAACGAGAAAGCAGGACCGAATATTTTATACACACCGAGTTGCGGATTCATATCGAATAGAGAACGAAAAAGTTTGTGCTAAAGAACAGTCCCTGCTTGCTTATGGGACAGACATGAACAAGCTTTATACTTCTGGTCCAATCCTTGGTCCATCAAACAACTTAGATAAAATTCTGAAAGAGCGAGACCGTCAGATTCAAGAATACGCTCGACAAGCACGACACGGTAAAGCTGCTAACAGTCAGTTAAAGAGTTCAAGAGCAACAACTGGAAAACATCTGATGTCAAGCCATGGAATCGACGTGTTCCACGAACAACCAGACCTCCAAATCGAACGGAGAAAAATCAAGCTACTCGTCGGGAATCGGAGCTGCGACGGAAGTTTTGAAATGTCCGACATATCGGCTAGTTTCATCGACATATTTCCAGAAGAATCCGACAACCCACCGGAGAGTTCATATGATTCTAGCGAAGAAGGAGATCAGAATGGAGAAACTTCTTCAATCGTTAAAGAAAACAGAGCTTTCTGGAAATCGCAAAAAGAAGTTCTTCAGGCGACTTTGAGAAGAACGAATTCGATTGAGTTAGAAATCCGGCAAGCAACGAAAAATGCACTCAGAGAAATGGATTTCAAGTCCATTCAATGCGGTTGCCGGAGAGCGGCGGAAGTTGCGGTGTGTCGGGAGTGCGTACAGAGAGAAGTATGCAATCATTTGAGAAACGCCGGTTACAATTGCGCCGTTTGTAAGTCTAAATGGAAAAGCTCACCGGAAATTCCATCAGGGGAGCACAGTTATTTGGAAGTGGTCGACGATTGTGATCCGAATGATAGAGTGATAATCGAGCTGAATTTTAGAGCGGAATTCGAAATAGCTAGAGCGAGTGAAGAGTACAAGCGATTGGTGAGACGGTTGCCGGAAGTATTCATCGGAAAAGACGAGAAGCTTCGAGAATTGATAAGAATTCTGTGCAATGCGGCGGAGAAGTGCATGAAGGAAAAGAAAATGCATTTGGGGCCATGGAGGAAGTACAGATACATGCAGGCCAAGTGGTTAGGGAAGTGCGAGAGGTCGACGCCGGCGCCGGTGCCGCTGCCAGTGGGATTATCCGGGCGGCCGCCGAAGGCAAGGGCCTCGATGCTTACTTATGATCTGCTGCAGAGCTTGCCGGCGGCCATGGTTAGCTCTGCTTCTGCGGTTGAAGTGGTGTGA 3222 45.47 MFFLDSGRLDFRNSFQCFFSTSAVCGSKSRVLKVFSELVGYIGRFGFWAAKMGCQCSKPSIDEDGKNRASEKFPSRKGSRDNLLKKGEDMRLNSVKRDEDVRINSSQRADSIRSKVKTDGVDMKLAYLDKRVNGSNRVHDDQIEKKKRERLEAAISANYPGKGSIPKAMEAEQVAAGWPSWLSSVAGEALEGWLPRRAETFEKLDKIGQGTYSSVYKARDIIQNKLVALKRVRFDNLDVESVKFMAREILILRRLDHPNVIKLEGLITSPRSCSLYLVFEYMEHDLTGLASRPGVKFSEPQVKCYMQQLLRGLDYCHSRGVLHRDIKGSNLLIDDNGILKIADFGLASPFDPHNQVPLTSRVVTLWYRPPELLLGASYYGVAVDLWSTGCILAELYSGKPILPGKTEVEQLHKIFKLCGSPPENYWKKLQLPHSTGFKTAQPYRRCIGEMLKDFPPSAVALVDKLLSIDPAHRGTAAAALKSEFFTTKPLACEPTSLPKYPPSKEIDAKFPGCRRQSRAEGKDPKDYVEGRRPKEAHINLSLNAKDEVNMSMQKRQGYSSFKGRGGVLNPHGDETVSGFLIPPPKQNQSVTEICSDTGRISHSGPLISKPDWMKSRKQLDDHSMALDGSNLSVLSRLVATRSNISDHPYDRPGPSQSEVGRLPDFVRDSESTRKQDRIFYTHRVADSYRIENEKVCAKEQSLLAYGTDMNKLYTSGPILGPSNNLDKILKERDRQIQEYARQARHGKAANSQLKSSRATTGKHLMSSHGIDVFHEQPDLQIERRKIKLLVGNRSCDGSFEMSDISASFIDIFPEESDNPPESSYDSSEEGDQNGETSSIVKENRAFWKSQKEVLQATLRRTNSIELEIRQATKNALREMDFKSIQCGCRRAAEVAVCRECVQREVCNHLRNAGYNCAVCKSKWKSSPEIPSGEHSYLEVVDDCDPNDRVIIELNFRAEFEIARASEEYKRLVRRLPEVFIGKDEKLRELIRILCNAAEKCMKEKKMHLGPWRKYRYMQAKWLGKCERSTPAPVPLPVGLSGRPPKARASMLTYDLLQSLPAAMVSSASAVEVV 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34274779 34282011 + CrPI670011_02g020780.1 Cre02g2078 491359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2078 1073 MobiDBLite consensus disorder prediction 60 82 - -
Cre02g2078 1073 MobiDBLite consensus disorder prediction 61 82 - -
Cre02g2078 1073 PANTHER CELL DIVISION PROTEIN KINASE 200 485 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cre02g2078 1073 Gene3D Transferase(Phosphotransferase) domain 1 284 522 - -
Cre02g2078 1073 CDD STKc_CDK9_like 201 485 - -
Cre02g2078 1073 MobiDBLite consensus disorder prediction 819 839 - -
Cre02g2078 1073 ProSiteProfiles Protein kinase domain profile. 201 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2078 1073 Pfam PDDEXK-like family of unknown function 809 1027 IPR006502 -
Cre02g2078 1073 MobiDBLite consensus disorder prediction 644 669 - -
Cre02g2078 1073 MobiDBLite consensus disorder prediction 815 839 - -
Cre02g2078 1073 Gene3D Phosphorylase Kinase; domain 1 188 283 - -
Cre02g2078 1073 MobiDBLite consensus disorder prediction 508 529 - -
Cre02g2078 1073 NCBIfam uncharacterized plant-specific domain TIGR01615 903 1028 IPR006502 -
Cre02g2078 1073 ProSitePatterns Protein kinases ATP-binding region signature. 207 230 IPR017441 GO:0005524(InterPro)
Cre02g2078 1073 SUPERFAMILY Protein kinase-like (PK-like) 196 490 IPR011009 -
Cre02g2078 1073 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g2078 1073 FunFam probable serine/threonine-protein kinase At1g54610 188 283 - -
Cre02g2078 1073 FunFam probable serine/threonine-protein kinase At1g54610 284 523 - -
Cre02g2078 1073 SMART serkin_6 201 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2078 1073 MobiDBLite consensus disorder prediction 503 529 - -
Cre02g2078 1073 Pfam Protein kinase domain 201 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2078 Cre-Chr2:34274779 Cre05g0708 Cre-Chr5:6258340 3.00E-161 dispersed
Cre06g1407 Cre-Chr6:8299779 Cre02g2078 Cre-Chr2:34274779 1.20E-28 dispersed
Cre07g0429 Cre-Chr7:1980963 Cre02g2078 Cre-Chr2:34274779 5.40E-24 dispersed
Cre02g2077 Cre-Chr2:34266371 Cre02g2078 Cre-Chr2:34274779 1.20E-167 tandem
Cre03g0899 Cre-Chr3:7743727 Cre02g2078 Cre-Chr2:34274779 7.90E-72 transposed
Cre05g1117 Cre-Chr5:10515345 Cre02g2078 Cre-Chr2:34274779 3.20E-207 transposed
Cre05g2344 Cre-Chr5:35045280 Cre02g2078 Cre-Chr2:34274779 1.80E-60 transposed
Cre07g0577 Cre-Chr7:3536231 Cre02g2078 Cre-Chr2:34274779 2.30E-28 transposed
Cre09g0812 Cre-Chr9:8162667 Cre02g2078 Cre-Chr2:34274779 1.10E-26 transposed
Cre02g2078 Cre-Chr2:34274779 Cre07g0640 Cre-Chr7:4193075 3.30E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63886 PF00069 Pkinase 2.20E-67 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2078 - - - 0.0