Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2094 ATGCTCCGATCCGCTCCTGGAATGGAGGATCAGCGAGATGATGTTGCACCATCAGAGCAAGGGCCTTCCAATGCTTCCTGGTGGTCTTCTGATTTTGAGGAGAAATTTGGATCTGTTTCTTTGGGCCCTCGGGAAGATATTGTAAGTGAAAAGGAAGAGATCATCAATTCTGACCAAGATGTGTTATTGTCGCCTCAGAGAGCTTCTCAAATTCTCTGGGGTACTGGAATGCTTTGTGAACCAATTCCAGATGGGTTCTATTCTGTTATTCCGGATAAAAGGCTGAAAGAGCGGTTTCACAGTATTCCTTCGCTGGATGAGCTTCGTGCTTTGGAGGCCGAAGGTTACAGAAACGATGTTATTCTTGTGGAGACAGAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAGTTCAAATCCAGCTGCAATTATCAAGAAGATTGCTGGACTGGTTTCTGATTTTTATAAACGACCAATTTTAGAAAGTCCAGCAAAAGCTGCTCTAGAAGAAAACTCCCACTTGTTCGAGGATAGAGGCATTCAATTACTTGGACAAATAAAATTTGGTTCTTGCCGTCCAAGAGCTATCTTATTTAAGGCTCTGGCGGACACTGTAGGGCTTGAAAGCCGTCTCATGGTGGGCTTGCCTAATGAGGGGGCTATTGGGTGCGTGGACTCATACAAGCATATGTCTGTGACAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTGATGCGATTCCCTGGCCAGTTGTTACCTCGGTCAACTAAGGCAATTTTTATGACCCATATTTCCGCTGCTGGTGAAAGCGATTCTGCAGAAAACGATTCCTGTGATTCACCACTAGAACCTAATAGTCCTCTTTATGGTTTCTCAGAAAGAGTTGATCCTGACAGTGCTGAGAAAGATGAGAGCCTTCAATTCCACAGAAAATTTGAAGCAGCTTCAAATGCATATGGTCATTCATTGCGCAACATGATGCTGCGATCAAGTACAACACTTGACAGGAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCGCGTGGCCGGTCTATGCTTAGTGGGGATAGGAAAGCCTTCAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGCGCTTCAACTTCAACTTCAGAAGCACGTAGATTAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTACGAGCAATGAGTGAAACATTGAAGCAAAATCGTCTTTTGAGAGGGCAAGAAGATGACAGGTCGTTCTCCCACCCTTCAAATGAAAGAAATAGTAGTTCAGATGTTCAGAGAAATGATCAAGTGGGCTCTCAAAGAGCAATATCATTACCATCATCGCCACATGTGTATAGGGGTCAAACCTCTGATAGAATTGGGCATTCAGCATATCCGAATCATGAATTAGCCTCAAAATGGACTAAAGTTCTTGAATCTTTCTCCTTGAATGACAAACCACTATTACCTTACCCAGAGTGGAACATCGATTACTCAGAACTGACCGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTTCGTGGCATTTGGAATGGAACAGATGTGGCAATCAAAGTTTTCCTAGAGCAAGATCTAACTCCTGAAAACATTGAAGACTTCTGTAACGAGATATCAATTCTTAGTCGTCTTCGACATCCTAATGTTATACTATTTCTGGGGGCATGCACAAAGCCGCCACGGTTATCAATGATCACCGAATACATGGAGATGGGTTCCTTGTATTCCTTGATCCATTTGAGTGGTCAGAAGAAAAAACTTAGCTGGCGGAGGAGACTGAAGATGTTGCGTGACATATGCAGGGGTTTGATGTGCATACACAGAATGAAAATAGCTCATCGGGACCTAAAAAGTGCAAATTGCCTAGTGAACAAGCACTGGACCGTCAAGATATGTGATTTTGGACTTTCAAGAATATTGACAGATGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTTCGAAATGAGCCCTTCACTGAAAAGTGTGATATTTTCAGCCTGGGGGTCATTATGTGGGAGCTATGCACGCTAAATAGACCATGGGAGGGTGTTCCACCGGAGCGGGTAGTTTATGCTGTTGGCACTGAGGGATCCCGCCTCGAGATTCCCGAAGGCCCGCTTGGCAGACTTATATCAGATTGTTGGGCGGAACCAAATGAACGGCCAAGCTGCGAAGAGATTCTCTCACGCTTGCTGGACTGCGACAAGAGACCATCTCAGTTTCCGAGTCCAAAACTTGAATGCATTTCAATTGCTTTACGTGTAAGAACTGAGAAGAATCTTGGTTCGTTTACTTGCTCTGCATTATTGCCATTTCTCGTGTATTCTTTACTTCCCAGTCAAGCAAGATCGTTGGAAGGGACCCTCCTCTCCACGTCTCTCTTTTACCAACCAACACACCTCCACACCATCTTCCGCTGGCCACTGCTTCACCTCCCTCCCGCTTACCTTTATTGCTTGCTGCACGTCCGGTCGCCAGCTGTTGGTCACCGATTGCCTCTTCTCTCTCTCTATCTTTCTTTCCCTCAACATCTCTCTCTTTCACCAACTAGCACTGTTCCACACCATTTGTCGCTGGTCACCGCTTCACCTCCTGGCGCTTACCTCTGTTGA 2811 44.86 MLRSAPGMEDQRDDVAPSEQGPSNASWWSSDFEEKFGSVSLGPREDIVSEKEEIINSDQDVLLSPQRASQILWGTGMLCEPIPDGFYSVIPDKRLKERFHSIPSLDELRALEAEGYRNDVILVETEKDKKLSMLKQLILTLVKGLSSNPAAIIKKIAGLVSDFYKRPILESPAKAALEENSHLFEDRGIQLLGQIKFGSCRPRAILFKALADTVGLESRLMVGLPNEGAIGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSAEKDESLQFHRKFEAASNAYGHSLRNMMLRSSTTLDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSTSEARRLRRRSISITPEIGDDIVRAVRAMSETLKQNRLLRGQEDDRSFSHPSNERNSSSDVQRNDQVGSQRAISLPSSPHVYRGQTSDRIGHSAYPNHELASKWTKVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTDAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEILSRLLDCDKRPSQFPSPKLECISIALRVRTEKNLGSFTCSALLPFLVYSLLPSQARSLEGTLLSTSLFYQPTHLHTIFRWPLLHLPPAYLYCLLHVRSPAVGHRLPLLSLYLSFPQHLSLSPTSTVPHHLSLVTASPPGAYLC 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34420950 34436385 - CrPI670011_02g020940.1 Cre02g2094 491375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2094 936 Gene3D Transferase(Phosphotransferase) domain 1 628 816 - -
Cre02g2094 936 MobiDBLite consensus disorder prediction 1 29 - -
Cre02g2094 936 MobiDBLite consensus disorder prediction 280 313 - -
Cre02g2094 936 SMART serkin_6 549 798 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2094 936 MobiDBLite consensus disorder prediction 455 469 - -
Cre02g2094 936 MobiDBLite consensus disorder prediction 470 502 - -
Cre02g2094 936 MobiDBLite consensus disorder prediction 1 16 - -
Cre02g2094 936 FunFam Serine/threonine-protein kinase isoform 1 540 627 - -
Cre02g2094 936 ProSiteProfiles Protein kinase domain profile. 549 812 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2094 936 MobiDBLite consensus disorder prediction 369 426 - -
Cre02g2094 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 668 680 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g2094 936 Pfam Ethylene-responsive protein kinase Le-CTR1 66 261 - -
Cre02g2094 936 PANTHER SERINE-THREONINE PROTEIN KINASE 328 798 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cre02g2094 936 MobiDBLite consensus disorder prediction 391 408 - -
Cre02g2094 936 MobiDBLite consensus disorder prediction 453 507 - -
Cre02g2094 936 CDD STKc_MAP3K-like 555 797 - -
Cre02g2094 936 Gene3D Phosphorylase Kinase; domain 1 542 627 - -
Cre02g2094 936 ProSitePatterns Protein kinases ATP-binding region signature. 555 576 IPR017441 GO:0005524(InterPro)
Cre02g2094 936 SUPERFAMILY Protein kinase-like (PK-like) 525 797 IPR011009 -
Cre02g2094 936 Pfam Protein tyrosine and serine/threonine kinase 551 797 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2094 Cre-Chr2:34420950 Cre05g1949 Cre-Chr5:31636477 7.90E-73 dispersed
Cre02g2094 Cre-Chr2:34420950 Cre10g2049 Cre-Chr10:35190531 4.30E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63887 PF07714 PK_Tyr_Ser-Thr 5.90E-59 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2094 - - - 0.0