Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2139 ATGGATGCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCTTCGCTTAAGCCAGAACGTGAAGGTTCCCCTGTGGTTACCGACGAGCTTGATGATTCGATCGCGATTGATCCTGGGATTAAGCTTATGTACTTGGCCAATGATGGTGACTTGGATGGGATTAGGGAGCTACTGGATTCGGGTACCGACGTGAATTTTCACGACACTGATGGCCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCCGGCCGGATGTCGTTGAGTTACTACTCGAAAGGGGTGCGGACGTCGACGTTCAGGACCAATGGGGCAGCACGGCTCTTGCAGATGCCATATATTACAAGAATCATGATGTGATCAAACTCTTAGAGAAACACGGTGCAAAGCTACCGATGGCTCCAATGCTCGTACAAAATGCTCGTGAAGTTCCGGAGTACGAGATCAATCCAAATGAGCTTGATTTTTCTAAGAGTGTGAACATTACAAAAGGAACTTTCCGCAGTGCTTCATGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAAGTTTTCACCGACGAAGATAAAGTGAAGGCATTTAGGGATGAACTTGCTTTACTTCAGAAGATACGGCATCCTAATGTTGTCCAATTTCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACAGAGTATTTGCCCCAGGGGGACCTTCATGCATTCTTGAAACGTAAAGGTTCCTTGAAGCTAGCAACAGTCGTAAAGTTTGCTCTTGACATTGCAAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATTCATCGTGATCTTGAACCTTCAAACATACTGCGGGATGATTCTGGGCACCTGAAAGTCGCAGACTTTGGAGTTAGCAAACTTCTAAAATTTTCGAATAGGGTTAAAGAAGACAGACCTGTGGCTGTGACATGTCAGGACACTTCATGGCGATATGCGGCACCTGAGGTTTATAAAAATGAAGAATATGATACAAAAGTGGATGTATTTTCATTTTCTTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAATGCCAGAAAATGAAGTAGCCAAAGCTTATATAGCTAACGAACGCCCACCATTTACGGCTCCACCAAAGCGTTATGCACTCGGAATACAGGAGCTCATTCAGGAATGTTGGGATGAGAATCCGCATAAAAGACCCACGTTTCGGCAAATAATAAGAAGGTTGGAGGATATTAACACTCGACTCATGCAAACGAGAAGCTTAAAGGCGAATTCATTCTGCAGTTCAGATCTTCTACCTCGGAAAGCAAATGACATCCACAGACGAGAAATATCCTTCATCTTTATAGTTGATATAATAATGATGCCACAAAAAGACCTGATAAACTTGCAAATCAGGATTATGAAAGCATTGTGTACGAGATGGCATGATGTAGTGACCATTAACAATGATGTAAAACCAAAACCAGCCCAATCGCAAACCCTAGGTGGCGCAAAAGGAAATGCTTCATTGATACCGCATATTCGGCGTCGCCATCACTTCCCACCACCTCTTATCCCTCCTCTCCTGCACTCTGTTTCGCTTCTTGTACTACTCTTTTGTGGAGGCTCAAGGGAAGTCTCTTCCTTTGCTCTCCCTTCATCGTCTCTCTGGTTCTTCTTTCCCGTGAAGTTTACAGCCGAGGAGCTTCGTAGGATTATGGACTTTAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGAAAGTCGACACTTACAGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGGATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAATATCTTATCAATCTTATTGATTCACCTGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACCGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAAACAGAGACCGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAAGTGGATGGAGAAGAGGCTTATCAAACATTTCAGAGGGTGATAGAGAATGCCAATGTGATTATGGCCACATACGAGGATCCACTTCTTGGCGATGTTCAAGTGTACCCCGAGAAAGGAACAGTCGCTTTCTCTGCTGGTCTGCACGGTTGGGCGTTTACCCTGACTAACTTTGCGAAGATGTATGCCTCCAAGTTTGGAGTAGACGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTTGATCCTGCAACCAAGAAGTGGACCAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTATGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGACAAGCTATGGCCCATGTTGCAGAAGCTTGGAGTTGTCATGAAGTCTGAAGAGAAGGATCTGATGAGTAAAGCATTGATGAAGAGGGTCATGCAAACATGGCTCCCAGCAAGCAATGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACGGCTCAAAAGTACCGTGTTGAGAATTTGTACGAGGGTCCACTAGATGATGCTTATGCGAGTGCCATTAGAAATTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGACGTGTCTTCTCGGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATTATGGGACCAAACTATGTTCCTGGCGAGAAGAAAGATTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACAGTGGAGGATGTGCCGTGTGGTAACACTGTTGCCATGGTTGGATTGGATCAATTCATCACAAAGAATGCTACTCTGACAAACGAGAAGGAAGTTGATGCCCATCCAATTCGAGCCATGAAATTTTCTGTATCTCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGGCTTAAACGTCTGGCGAAGTCAGATCCTATGGTTGTATGTACAATGGAGGAATCTGGTGAGCACATTGTTGCCGGTGCTGGAGAACTACATCTTGAGATCTGTCTGAAGGATTTGCAAGATGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACGGTGATGAGTAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCGATGGAGGAAGGACTGGCAGAAGCTATTGACGATGGCCGCATCGGACCACGGGATGACCCTAAAGTTAGGTCTAAAATCTTGTCAGAGGAGTTTGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACTGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGATTCCGTTGTCGCCGGTTTCCAGTGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCGACCGCTAGGAGGGTAATTTATGCTTCTCAGCTGACCGCCAAACCAAGACTTCTTGAGCCTGTGTACCTAGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGGCATGTCTTTGAGGAAATGCAGAGGCCCGGTACCCCTCTTTACAACATCAAGGCGTATCTCCCTGTCATTGAGTCCTTCGGGTTCTCGAGCACATTGAGAGCTGCAACTTCCGGGCAGGCGTTCCCACAGTGTGTTTTCGACCATTGGGACATGATGTCGTCGGATCCATTGGAACCTGGTTCCCAGGCTGCACAGTTAGTTGCAGATATCCGCAAGAGGAAGGGATTGAAGGAACAAATGACCCCACTTTCCGAGTTCGAGGACAAGCTGTAG 4215 46.07 MDANVRARFTLGKQSSLKPEREGSPVVTDELDDSIAIDPGIKLMYLANDGDLDGIRELLDSGTDVNFHDTDGRTSLHVAACQGRPDVVELLLERGADVDVQDQWGSTALADAIYYKNHDVIKLLEKHGAKLPMAPMLVQNAREVPEYEINPNELDFSKSVNITKGTFRSASWRGIQVAVKTLGEEVFTDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPQGDLHAFLKRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKFSNRVKEDRPVAVTCQDTSWRYAAPEVYKNEEYDTKVDVFSFSLILQEMIEGNPPFPTMPENEVAKAYIANERPPFTAPPKRYALGIQELIQECWDENPHKRPTFRQIIRRLEDINTRLMQTRSLKANSFCSSDLLPRKANDIHRREISFIFIVDIIMMPQKDLINLQIRIMKALCTRWHDVVTINNDVKPKPAQSQTLGGAKGNASLIPHIRRRHHFPPPLIPPLLHSVSLLVLLFCGGSREVSSFALPSSSLWFFFPVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 1404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34964650 34978956 + CrPI670011_02g021390.1 Cre02g2139 491420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2139 1404 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515(InterPro)
Cre02g2139 1404 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 578 905 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g2139 1404 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 619 634 IPR031157 -
Cre02g2139 1404 SMART ANK_2a 71 100 IPR002110 GO:0005515(InterPro)
Cre02g2139 1404 SMART ANK_2a 39 67 IPR002110 GO:0005515(InterPro)
Cre02g2139 1404 SMART ANK_2a 104 133 IPR002110 GO:0005515(InterPro)
Cre02g2139 1404 SUPERFAMILY Ribosomal protein S5 domain 2-like 1123 1287 IPR020568 -
Cre02g2139 1404 Gene3D - 564 798 IPR027417 -
Cre02g2139 1404 Gene3D Transferase(Phosphotransferase) domain 1 232 449 - -
Cre02g2139 1404 FunFam Translation elongation factor 2 1284 1404 - -
Cre02g2139 1404 CDD STKc_MAP3K-like 162 415 - -
Cre02g2139 1404 Pfam Elongation factor G C-terminus 1285 1371 IPR000640 -
Cre02g2139 1404 SMART EFG_C_a 1285 1374 IPR000640 -
Cre02g2139 1404 Gene3D - 34 142 IPR036770 -
Cre02g2139 1404 FunFam Translation elongation factor 2 564 798 - -
Cre02g2139 1404 CDD aeEF2_snRNP_like_IV 1120 1292 - -
Cre02g2139 1404 Pfam Elongation factor Tu domain 2 955 1023 IPR004161 GO:0005525(InterPro)
Cre02g2139 1404 FunFam Os01g0748600 protein 142 434 - -
Cre02g2139 1404 FunFam Integrin-linked protein kinase family 24 147 - -
Cre02g2139 1404 Pfam Ankyrin repeats (3 copies) 43 130 IPR002110 GO:0005515(InterPro)
Cre02g2139 1404 CDD EF2_II 936 1031 - -
Cre02g2139 1404 CDD eEF2_snRNP_like_C 1288 1366 - -
Cre02g2139 1404 Pfam Elongation factor G, domain IV 1171 1283 IPR005517 GO:0005525(InterPro)
Cre02g2139 1404 CDD EF2 581 791 - -
Cre02g2139 1404 Pfam Protein tyrosine and serine/threonine kinase 161 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g2139 1404 FunFam Translation elongation factor 2 904 1045 - -
Cre02g2139 1404 SUPERFAMILY EF-G C-terminal domain-like 1288 1399 IPR035647 -
Cre02g2139 1404 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
Cre02g2139 1404 Pfam Elongation factor Tu GTP binding domain 579 782 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g2139 1404 SUPERFAMILY EF-G C-terminal domain-like 1045 1121 IPR035647 -
Cre02g2139 1404 Gene3D - 1284 1404 - -
Cre02g2139 1404 ProSiteProfiles Ankyrin repeat region circular profile. 71 102 - -
Cre02g2139 1404 Pfam Elongation Factor G, domain III 1048 1110 IPR041095 -
Cre02g2139 1404 SUPERFAMILY Translation proteins 903 1037 IPR009000 -
Cre02g2139 1404 SMART EFG_IV_2 1167 1283 IPR005517 GO:0005525(InterPro)
Cre02g2139 1404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 565 902 IPR027417 -
Cre02g2139 1404 FunFam Translation elongation factor 2 1047 1124 - -
Cre02g2139 1404 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
Cre02g2139 1404 NCBIfam small GTP-binding protein domain 581 736 IPR005225 GO:0005525(InterPro)
Cre02g2139 1404 Gene3D Translation factors 904 1045 - -
Cre02g2139 1404 PRINTS GTP-binding elongation factor signature 582 595 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g2139 1404 PRINTS GTP-binding elongation factor signature 626 634 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g2139 1404 PRINTS GTP-binding elongation factor signature 714 723 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g2139 1404 PRINTS GTP-binding elongation factor signature 678 689 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g2139 1404 PRINTS GTP-binding elongation factor signature 662 672 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g2139 1404 CDD EF2_snRNP_III 1048 1120 - -
Cre02g2139 1404 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 564 1403 - GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Cre02g2139 1404 SUPERFAMILY Ankyrin repeat 38 131 IPR036770 -
Cre02g2139 1404 SUPERFAMILY Protein kinase-like (PK-like) 163 422 IPR011009 -
Cre02g2139 1404 FunFam Translation elongation factor 2 1130 1283 - -
Cre02g2139 1404 Gene3D - 1131 1283 IPR014721 -
Cre02g2139 1404 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1047 1124 - -
Cre02g2139 1404 ProSiteProfiles Protein kinase domain profile. 98 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2139 Cre-Chr2:34964650 Cre05g2570 Cre-Chr5:36921576 3.60E-69 dispersed
Cre01g0623 Cre-Chr1:5522867 Cre02g2139 Cre-Chr2:34964650 6.20E-21 transposed
Cre02g2033 Cre-Chr2:33849516 Cre02g2139 Cre-Chr2:34964650 9.20E-168 transposed
Cre02g2157 Cre-Chr2:35146064 Cre02g2139 Cre-Chr2:34964650 0.00E+00 transposed
Cre09g1018 Cre-Chr9:10427429 Cre02g2139 Cre-Chr2:34964650 1.30E-116 transposed
Cre10g1787 Cre-Chr10:32293737 Cre02g2139 Cre-Chr2:34964650 9.30E-23 transposed
Cre09g1453 Cre-Chr9:27746350 Cre02g2139 Cre-Chr2:34964650 1.80E-86 transposed
Cre02g2139 Cre-Chr2:34964650 Cre03g0991 Cre-Chr3:8722559 9.20E-142 wgd
Cre02g2139 Cre-Chr2:34964650 Cre04g2018 Cre-Chr4:37481255 5.60E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63889 PF00009 GTP_EFTU 6.40E-66 CL0023 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2139 K03234 - csv:101208886 1652.49