Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2152 ATGGCAGCTTCATCAATGGCTCTCTCCTCCCCATCTCTCGCCGGCCAAGCCGTCAAATTATCCCCCACGACCTCCGACCTCCTCGGCGACGGTCGCATCACCATGAGAAAAACTGCCGGAAAGCCCAAGCCCATTTCTTCCGGAAGCCCATGGTACGGCCCAGATCGCGTCAAATACCTAGGCCCATTCTCTGGCGAGCCCCCTTCTTATTTGACTGGAGAATTCCCCGGCGATTACGGCTGGGACACCGCCGGTTTATCCGCCGACCCGGAAACTTTCGCGAAAAACCGTGAGCTGGAAGTGATCCACTCGAGATGGGCCATGCTCGGCGCTCTGGGCTGCGTCTTCCCGGAGCTGCTGTCTCGCAACGGAGTGAAATTCGGCGAAGCCGTGTGGTTCAAAGCTGGGTCTCAAATCTTTAGCGAGGGTGGGCTAGATTATTTGGGGAACCCGAGCCTGGTCCACGCTCAGAGCATTTTAGCCATTTGGGCTTGTCAAGTTGTGCTAATGGGTGCGGTTGAAGGGTACAGAATTGCGGGGGGGCCATTGGGGGAAATCACTGACCCGATTTACCCAGGTGGGAGCTTTGATCCATTGGGGCTTGCTGATGATCCAGAGGCGTTTGCGGAATTGAAAGTGAAGGAACTTAAGAATGGAAGATTGGCTATGTTTTCGATGTTTGGTTTCTTTGTACAGGCGATTGTGACTGGGAAAGGACCTTTGGAGAATTTGGCTGATCATTTGGCCGATCCTGTTAACAATAATGCTTGGGCTTATGCTACTAACTTTGTACCTGGAAAGTGA 804 53.36 MAASSMALSSPSLAGQAVKLSPTTSDLLGDGRITMRKTAGKPKPISSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35092041 35092844 - CrPI670011_02g021520.1 Cre02g2152 491433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2152 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 267 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cre02g2152 267 MobiDBLite consensus disorder prediction 28 50 - -
Cre02g2152 267 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
Cre02g2152 267 FunFam Chlorophyll a-b binding protein, chloroplastic 58 260 - -
Cre02g2152 267 Pfam Chlorophyll A-B binding protein 67 234 IPR022796 -
Cre02g2152 267 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0613 Cre-Chr2:3104139 Cre02g2152 Cre-Chr2:35092041 3.20E-120 dispersed
Cre02g2152 Cre-Chr2:35092041 Cre03g1026 Cre-Chr3:9159931 4.90E-145 dispersed
Cre08g0169 Cre-Chr8:3848296 Cre02g2152 Cre-Chr2:35092041 6.80E-56 transposed
Cre11g2304 Cre-Chr11:34640981 Cre02g2152 Cre-Chr2:35092041 4.70E-44 transposed
Cre02g2152 Cre-Chr2:35092041 Cre04g2048 Cre-Chr4:37721756 1.10E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2152 K08912 - csv:101213845 540.806