Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2162 ATGGACGCGGCCAAGGAAGAGTTTCTCAAGGAGTTCGGTCGAGACTACGGCTATCCCGGCGGTCTAAAAACCATCGATGAAATTCGAGCCACTGAATTTAAGCGCCTAGGTGGTATGGCCTACTTGGACCACGCAGCAGCAACTTTGTATTCCGAGCTACAAATGGAGGCGATCTTTAAAGATCTCACTTCTAATATATATGGAAATCCTCATAGCCAAAGTGATTCTAGCTCTGCCACTTCTGACATTGTAAGGAATGCCCGTCAACAGGTCCTTGACTATTTCAAAGCATCTCCTAAAGACTACAAATGCATATTTACTTCTGGTGCAACAGCAGCACTAAAATTAGTTGGTGAAGCCTTCCCGTGGAGTTATCAGAGCAGCTTTGTGTACACAATGGAGAATCACAACAGCGTTCTTGGAATCAGAGAATATGCTCTTGAACAAGGAGCTGAAGCCTATGCCATAGATATTGAAGATGCAGAACATGATGCATTCACAGGAAATCTTGCATCAGTGCAAGCAACAAAGCACCAAATACTAAGGAGAAATGAAGCCAAGTTTCTGGATAAAGATCATACAGGCAGTGCATATAACTTGTTTGCCTTCCCTTCAGAGTGCAATTTCTCTGGTTCGAAATTTAGCCTTGAATTGGTGAAGATTGTTAAAGAAGATTCAATTAGATATTCTGATGGCTCTCCATCTTTTAATGGACGCTGGAAAGTTTTGATCGATGCTGCAAAAGGATGTGCCACAGAACCCCCAGATTTATCCAAGTGTCCTGCTGATTTTGTTGTTATCTCTTTCTATAAGCTGTTTGGGTATCCAACTGGACTTGGAGCTCTCATAGTTCATACGGATGCTGCCAAGTTATTGAAGAGAACATACTTCAGTGGAGGCACCGTTGCTGCTTCAATTGCTGACATTGACTATGTCAAACGGAGAGAGGGCATTGAGGAGCTCTTTGAAGATGGTACAATCTCATTCCTGAGCATCGCCTCTCTATGCCATGGGTTCAAAGTTCTAAATTCTCTAACTATACCTGCAATATCTCGGCATACTTCATCACTTGCCACGTATTTGAGGAACATCCTTGTGGCCCTGAGGCATGCAAATGGAACAAGCGTATGCACCCTCTATGGAAGTTGCTCTTCCAAGACACTATGTAACAAAATGGGTCCGGTAGTCTCATTCAACTTGAGACAACCAGATGGATCCTGGGTTGGACATCGAGAAGTGGAAAAGCTGGCCTCTCTGTCTGGGATTCAGTTAAGGACAGGATGTTTTTGTAATCCTGGTGCATGTGCAAAATATCTTGGTCTATCTCATTTGGATTTTGCTACAAATATTGAGGCAGGCCATATCTGCTGGGATGATAATGATATAATTAATGGAAAACCAACTGGTGCTGTGAGAGTATCCTTGGGATACATGTCAACTTATGAAGATGTCAAGAAATTCATTGATTTTGTGGCAACTTCCTTTGTCTCTACTCGAACTCATGCTAGACATGGATTAGAATTTTGCGGAAGGTCCATCCATTTCACAGACATAGGTTTTAAGAACAGATATTCAGCTTCTGGATTTGACCTCAAGTCTATTACTGTCTATCCAATCAAATCATGTGCAGGATTCAGCATGGATAGATGGCCGTTAAGTAGTCGAGGGCTTCTTCATGATCGGGAGTGGCTTCTTCAAAGCCTGACGGGTGAAACTCTTACACAGAAGAAGGTTCCTGAAATGTCACTTGTACGTACTTATATTGACCTCAGTCAGGGAATATTGTTTATTGACTCCCCACGTTGCAAAGAGAGACTGCAGATCACCCTGAATTCAAATCCTTTCAATGGAAAGAGAGAAGAAATAAGTTTGCATGGTCAGATATATCAAGTCCAGGGTTACGACAAAGAAGTTGATACTTGGTTTAGTGCAGCTATTGGTCGACCATGTACTTTGTTGCGGCATATAAATTCCAGTCATTGTGCCAGCTTGTGTGAGAGAGATGGTGTTGGTACCTGTAGAGAATCACGAAATCGCTTGAATTTTCCCAATGAAGCACAGTTCTTGCTGGTATCTGAGGAGAGTGTATCAGACCTCAATAACAGATTGAATTCAAATGTTGGAAAGGACGTTCATAGAACATCACTTCAAGTTAATCCTATGAGGTTCCGGCCAAATCTTGTCATATCTGGAGGCAGACCTTATGCTGAAGATGAGTGGAGAAATATTAAAATTGGCAACAAGTACTTCAGATCGTTAGGTGGATGCAACCGTTGCCAGATGATCAATTTTGTTATTGATGCTGAACAAGTCCGGAAGACAAATGAACCTTTAGCTACTTTAGCATCATACCGGAGGGTGAAGGGGAAAATTTTGTTTGGGGTACTGTTGAGATATGAATGTGAGGCTGAAGAAGGGAAGACTGGTGACTTATGGCTTCAGGTTGGAGAAACTATAATCCCTGATTCCGAATAG 2475 42.26 MDAAKEEFLKEFGRDYGYPGGLKTIDEIRATEFKRLGGMAYLDHAAATLYSELQMEAIFKDLTSNIYGNPHSQSDSSSATSDIVRNARQQVLDYFKASPKDYKCIFTSGATAALKLVGEAFPWSYQSSFVYTMENHNSVLGIREYALEQGAEAYAIDIEDAEHDAFTGNLASVQATKHQILRRNEAKFLDKDHTGSAYNLFAFPSECNFSGSKFSLELVKIVKEDSIRYSDGSPSFNGRWKVLIDAAKGCATEPPDLSKCPADFVVISFYKLFGYPTGLGALIVHTDAAKLLKRTYFSGGTVAASIADIDYVKRREGIEELFEDGTISFLSIASLCHGFKVLNSLTIPAISRHTSSLATYLRNILVALRHANGTSVCTLYGSCSSKTLCNKMGPVVSFNLRQPDGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHLDFATNIEAGHICWDDNDIINGKPTGAVRVSLGYMSTYEDVKKFIDFVATSFVSTRTHARHGLEFCGRSIHFTDIGFKNRYSASGFDLKSITVYPIKSCAGFSMDRWPLSSRGLLHDREWLLQSLTGETLTQKKVPEMSLVRTYIDLSQGILFIDSPRCKERLQITLNSNPFNGKREEISLHGQIYQVQGYDKEVDTWFSAAIGRPCTLLRHINSSHCASLCERDGVGTCRESRNRLNFPNEAQFLLVSEESVSDLNNRLNSNVGKDVHRTSLQVNPMRFRPNLVISGGRPYAEDEWRNIKIGNKYFRSLGGCNRCQMINFVIDAEQVRKTNEPLATLASYRRVKGKILFGVLLRYECEAEEGKTGDLWLQVGETIIPDSE 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35197626 35220809 - CrPI670011_02g021620.1 Cre02g2162 491443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2162 824 Hamap Molybdenum cofactor sulfurase [MOCOS]. 15 821 IPR028886 GO:0006777(InterPro)|GO:0008265(InterPro)
Cre02g2162 824 Gene3D - 55 340 IPR015421 -
Cre02g2162 824 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 4 496 - -
Cre02g2162 824 SUPERFAMILY MOSC N-terminal domain-like 531 656 - -
Cre02g2162 824 Pfam Aminotransferase class-V 41 160 IPR000192 -
Cre02g2162 824 Pfam Aminotransferase class-V 241 487 IPR000192 -
Cre02g2162 824 Pfam MOSC N-terminal beta barrel domain 530 648 IPR005303 -
Cre02g2162 824 SUPERFAMILY PK beta-barrel domain-like 688 781 IPR011037 -
Cre02g2162 824 Gene3D Aspartate Aminotransferase, domain 1 341 497 IPR015422 -
Cre02g2162 824 Pfam MOSC domain 679 819 IPR005302 GO:0003824(InterPro)|GO:0030151(InterPro)|GO:0030170(InterPro)
Cre02g2162 824 SUPERFAMILY PLP-dependent transferases 32 492 IPR015424 -
Cre02g2162 824 ProSiteProfiles MOSC domain profile. 662 822 IPR005302 GO:0003824(InterPro)|GO:0030151(InterPro)|GO:0030170(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2162 K15631 - - csv:101220625 1496.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2162 Cre-Chr2:35197626 Cre09g1992 Cre-Chr9:38913934 1.20E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1040 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01813 Cam02g1918 Cec02g1939 Cco02g1983 Clacu02g1900 Cmu02g1847 Cre02g2162 . . . . . . . . Blo15g00605 . . . . . . Bma12g00598 Sed14g1679 . . . . . . . . Bhi10g00965 Tan05g0609 Cmetu11g0122 . . . . . . . . . . . . Csa06g01170 Chy11g01023 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005491 1 7 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 39