Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2163 ATGAAGGAGATCAGTGGAAGAAAACAAGGCACATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGTGTTTTCGCCCCGTATTTCCCCGCCGACGAACCTCATAAATTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGAGCTACCAGAGCAGCAACGAAGCGATGCAGTTAGTTCGATGGTGTACGAGGCAAACGCGAGGGTGCGAGATCCAGTGTACGGTTGCGTTGGAGCCATATCGTCGCTACAACAACAAATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAGGTGGTTCACATGAGGATGCGCCAATTCCCGTCGTCCTCTTGCAACCCGACTGCGGGCCACTCGCCGGAAACCACCTCACCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG 522 51.92 MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSSSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35235154 35237234 + CrPI670011_02g021630.1 Cre02g2163 491444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2163 173 Coils Coil 94 114 - -
Cre02g2163 173 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Cre02g2163 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 134 - -
Cre02g2163 173 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Cre02g2163 173 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2163 Cre-Chr2:35235154 Cre07g0805 Cre-Chr7:6832827 2.90E-45 dispersed
Cre09g1636 Cre-Chr9:33675716 Cre02g2163 Cre-Chr2:35235154 1.00E-58 transposed
Cre02g1314 Cre-Chr2:16487204 Cre02g2163 Cre-Chr2:35235154 5.30E-18 transposed
Cre01g0615 Cre-Chr1:5414155 Cre02g2163 Cre-Chr2:35235154 1.80E-23 wgd
Cre01g0226 Cre-Chr1:1635072 Cre02g2163 Cre-Chr2:35235154 4.40E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53210 PF03195 LOB 1.00E-43 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2163 - - - 0.0