Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2172 ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTTGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCCGATTATAACATCCAAAAGGAATCAACCCTTCACTTGGTCTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATCAAGGAGCGGGTTGAGGAAAAAGAGGGTATTCCCCCTGTACAGCAAAGGCTCATTTATGCCGGTAAACAGCTTGGAGATGACAAAACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTTGCCCTGAGGGGTGGTTATCTGGCTTGTATCACTGGCACAAAGTGTTTGGATGTCCTTCACCAGGGTACCATTAATGAAGATTCAGGGCAATGGGTGTGA 540 45.74 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYLACITGTKCLDVLHQGTINEDSGQWV 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35344359 35351652 + CrPI670011_02g021720.1 Cre02g2172 491453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2172 179 PRINTS Ubiquitin signature 11 31 IPR019956 -
Cre02g2172 179 PRINTS Ubiquitin signature 53 74 IPR019956 -
Cre02g2172 179 PRINTS Ubiquitin signature 32 52 IPR019956 -
Cre02g2172 179 PANTHER UBIQUITIN 1 76 IPR050158 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0019941(PANTHER)|GO:0031386(PANTHER)|GO:0031625(PANTHER)
Cre02g2172 179 SUPERFAMILY Ubiquitin-like 79 152 IPR029071 -
Cre02g2172 179 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Cre02g2172 179 FunFam Polyubiquitin 3 1 76 - -
Cre02g2172 179 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Cre02g2172 179 SMART ubq_7 1 72 IPR000626 GO:0005515(InterPro)
Cre02g2172 179 SMART ubq_7 77 148 IPR000626 GO:0005515(InterPro)
Cre02g2172 179 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515(InterPro)
Cre02g2172 179 CDD Ubl_ubiquitin 1 76 - -
Cre02g2172 179 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Cre02g2172 179 FunFam NEDD8 protein 77 154 - -
Cre02g2172 179 CDD Ubl_NEDD8 79 152 IPR038738 -
Cre02g2172 179 Gene3D - 78 157 - -
Cre02g2172 179 Gene3D - 1 77 - -
Cre02g2172 179 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515(InterPro)
Cre02g2172 179 Pfam Ubiquitin family 79 149 IPR000626 GO:0005515(InterPro)
Cre02g2172 179 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0514 Cre-Chr2:2232471 Cre02g2172 Cre-Chr2:35344359 1.10E-09 dispersed
Cre02g2172 Cre-Chr2:35344359 Cre10g0781 Cre-Chr10:7656887 8.90E-66 dispersed
Cre02g2172 Cre-Chr2:35344359 Cre04g1833 Cre-Chr4:36100555 8.90E-66 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2172 K12158 - csv:101214716 293.893