Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2177 ATGGATCAAGAAGTATTAGTCGACGAGAGTTTCCCGCTTTTCTCAAAATCCCATCGAAAGAAGCATAAACCTTCCGGAAACCCCACCGCTGCTCCTGTTTCCACCGCCGTCGAGAACATTGCTCCGAAGAAGTCTCTTCAGATTGAGAAATCCACAGAACTTAGCACCAAATCCACCAACAATGTTACATTTGCCGACCTCGGCTTGTCGGAATGGATCGTCCAGACTTGCAAAGAATTGGTTATGAAGAAGCCCACGGCGGTTCAAACCCACTGCATCCCTAAGATTCTTGCTGGCCTCGACGTACTTGGTATTGCCCAAACTGGGAGTGGGAAGACTGCTGCCTTTGCGTTGCCGATTCTTCAACGGCTTTCCGAGACCCCTTTTGGTGTCTTCGCGTTGGTGGTCACTCCCACTAGGGAATTGGCCTATCAATTGGCTGAGCAGTTCAGGGCACTCGGTTCCTGCTTGAATTTGCGGTGCTCTGTGGTTGTTGGAGGTATGGATATGTTGAACCAGACGCAGAGTTTGTTGAAGAGGCCTCATATAGTAATTGCAACGCCGGGAAGGGTTAAAGTATTGCTGGAGAACCCTGATATCCCTGTCGTCTTTTCCAAAACTAAGTTCCTAGTTCTGGATGAAGCTGATAGAGTATTGGATGTTGGCTTTGAAGAAGAATTGAAAGTAATCTTCCAATGCTTGCCACACAACCGTCAAACTCTATTATTCTCTGCAACAATGACGAAGGATCTGGAAACACTGCTCGAGCTTTCTGCAAACAAGGCGTACTTTTACGAGGCTTATGAAGGCTTCAAGACAGTTGATATGCTCAAGCAGCAATATGTATTTATTCCAAAGGACGTGAAGGATCTGTATCTACTACATATTTTGTCTAAAATGGAAGACATGGGTATTCGATCAGCAATCATATTTGTCCAAACTTGCAAAAGTTGTCACCTGTTAGGGTTGTTGCTTGAAGCACTCGATCAGGAGGTGGCAGCATTGCATTCATTTAAGTCACAGTCTGAGAGGCTTGCTGCACTCTACCGTTTCAAATCAGGACAAGTTCCTGTATTGCTTGCAACTGATGTTGCTAGTCGAGGTTTGGATATTCCAACGGTTGATCTTGTTATCAACTACGATATTCCAAGGTTTCCAAGAGATTATGTTCATCGAGTGGGACGTACTGCACGTGCAGGCAGAGGAGGATTGGCTGTGAGCTTTATTACCCAGAATGATGTGCAGCTTATTCATGAAATAGAGGCCAATCTTGGAAAGCAATTGGAGATTTTTGAGTGCAAGGAGAATGAAGTGCTTGAGAATATTACCAAGGTTTACAAGGCTAGACATGTGGCAAAAATGAAGATGGTGGATGATGGATTTGAGGAGAAAGTAAAAGAACGAAAGAAACAGAAATTAAAAACATTGGCAGAGAAAGGATTATTGAAGAAAAGGAACAAAAGGAGAAGAAAAGAAAAAACTTCCCAAATAATTGGCAGTTAA 1503 43.78 MDQEVLVDESFPLFSKSHRKKHKPSGNPTAAPVSTAVENIAPKKSLQIEKSTELSTKSTNNVTFADLGLSEWIVQTCKELVMKKPTAVQTHCIPKILAGLDVLGIAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSCLNLRCSVVVGGMDMLNQTQSLLKRPHIVIATPGRVKVLLENPDIPVVFSKTKFLVLDEADRVLDVGFEEELKVIFQCLPHNRQTLLFSATMTKDLETLLELSANKAYFYEAYEGFKTVDMLKQQYVFIPKDVKDLYLLHILSKMEDMGIRSAIIFVQTCKSCHLLGLLLEALDQEVAALHSFKSQSERLAALYRFKSGQVPVLLATDVASRGLDIPTVDLVINYDIPRFPRDYVHRVGRTARAGRGGLAVSFITQNDVQLIHEIEANLGKQLEIFECKENEVLENITKVYKARHVAKMKMVDDGFEEKVKERKKQKLKTLAEKGLLKKRNKRRRKEKTSQIIGS 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35412094 35415745 - CrPI670011_02g021770.1 Cre02g2177 491458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2177 500 SMART ultradead3 81 280 IPR014001 -
Cre02g2177 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 93 265 IPR014001 -
Cre02g2177 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 276 439 IPR001650 -
Cre02g2177 500 CDD DEADc_DDX49 64 266 - -
Cre02g2177 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 62 90 IPR014014 GO:0003724(InterPro)
Cre02g2177 500 Pfam DEAD/DEAH box helicase 86 253 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cre02g2177 500 MobiDBLite consensus disorder prediction 476 500 - -
Cre02g2177 500 Gene3D - 32 266 IPR027417 -
Cre02g2177 500 Pfam Helicase conserved C-terminal domain 301 400 IPR001650 -
Cre02g2177 500 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 19 491 IPR050079 -
Cre02g2177 500 SMART helicmild6 319 400 IPR001650 -
Cre02g2177 500 Gene3D - 273 498 IPR027417 -
Cre02g2177 500 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 211 219 IPR000629 -
Cre02g2177 500 MobiDBLite consensus disorder prediction 16 35 - -
Cre02g2177 500 CDD SF2_C_DEAD 277 409 - -
Cre02g2177 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 418 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2177 Cre-Chr2:35412094 Cre09g2437 Cre-Chr9:43748222 9.30E-97 dispersed
Cre02g2177 Cre-Chr2:35412094 Cre01g1476 Cre-Chr1:27975393 9.40E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2177 K14778 - csv:101215196 870.537