Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre02g2179 | ATGGCGTCTGCAGCTTCCCGTGCCACTTTCCATCTCCTTCCCACCACATCCTCTTCCACTTCTTCAACCCGTTCTGCCCTTCTTCAATTTTCCCCATCCACCACTTCCTCTTCCTCAATTCGCCTCCGCAGCTCCGCCACTCACCGCCTTGGCTTTGCCGCCGCAGACCCGCTTTTCTCCCTCCATGTCGCTTCCAAGATTCGGTCGTTTGGAGGCAAGGCTTCGAGGGGTGTGGTGTCCATGGCCAAGAAGAGCGTTGGGGATTTGTCTGCTGCTGACTTGAAGGGGAAGAAAGTGTTCGTCAGGGCTGATCTGAACGTGCCCTTGGATGATAATCAGAATATTACTGATGACACTAGGATCAGGGCTGCTATTCCTACAATCAAGCATTTGACAGAGAAGGGAGCTAAAGTCATTCTCTCCAGTCATCTGGGAAGACCAAAAGGTGTGACTCCAAAGTACAGCTTGGCACCTCTTGTGCCTAGGCTTTCTGAACTCCTTGGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGTCCCGAGGTTGAAAAGTTGGTTGCTTCCCTGCCCGAGGGTGGCGTCCTTCTCCTTGAAAATGTCAGATTCTACAAGGAAGAAGAGAAAAATGAACCCGAGTTTGCAAAGAAGCTTGCTTCTCTAGCTGATCTTTATGTGAACGATGCATTTGGAACTGCCCATAGAGCTCATGCTTCAACCGAGGGAGTCACCAAGTTTTTGAAGCCATCCGTAGCTGGTTTCCTCTTGCAGAAGGAACTTGACTATCTAGTGGGGGCCGTGTCAAGCCCAAAGAGGCCATTTGCTGCTATTGTTGGTGGTTCAAAGGTGTCTTCAAAGATTGGAGTGATTGAGTCACTTCTAGAAAAGTGTGACATCCTACTCCTCGGTGGTGGAATGATCTTTACATTTTACAAGGCACAGGGACTTTCCGTTGGTTCATCTTTGGTGGAAGAGGATAAGCTAGATTTAGCAACCTCCCTCCTCGCGAAAGCCAAGGCGAAAGGAGTATCCCTTTTGTTACCAACTGATGTCGTCATTGCAGACAAGTTTGCTCCCGATGCAAACAGCAAGATTGTCCCAGCATCTGCCATCCCTGATGGATGGATGGGGTTGGACGTTGGGCCAGATTCCGTAAAGACATTCAATGATGCTTTGGACACTACCCAAACTATCATCTGGAATGGACCAATGGGAGTGTTCGAATTCGACAAGTTTGCAGTCGGCACCGAGGCGATTGCTAAGAAACTTGCGGAGCTCAGCGGAAAGGGGGTGACAACCATCATCGGTGGTGGAGACTCGGTTGCAGCTGTGGAGAAGGTGGGAGTTGCGAACGTCATGAGCCACATTTCGACTGGTGGGGGTGCTAGTTTGGAGTTGTTGGAAGGCAAAGAGCTACCCGGTGTCCTTGCTCTTGACGAGGCCGTACCTGTCACCGTGGTTTTTGCGTTTTGGAGCGCATCCTTTTTGGTCTTTTGCCGCCATTTCTTCTTCGATCATCGAAGAAGCTATACGACCATGGCTTTCTCATCCTCCCTCGCTCGATCTGCCGTTTCCTCTTCTCTGATCGAAGCTTCTCGTTCTGACTTGTCGCCGTCCGACTGCCGGAAGGCTTCATGCGTCGGGAGCTCTTTGAAGCTTCAATCTGGTGTTTTTGGAACTACTATCTCGAGTGGGGCGTCTTCTTTACAGTTAAGGTCATCTAAAGTTCGAACCGTCCAACCCATCAAAGCTACGGCCACGGAGGCGCCTCCGACGATCCAAAAAACTCCGAGCGGTGGGAAGACCAAGATAGGAATCAATGGCTTTGGTCGAATTGGAAGACTGGTGTTGCGAATTGCAACCTCCAGAGATGATATCGATGTTGTAGCAGTTAATGATCCATTTGTTGATGCCAAGTACATGGCTTACATGTTCAAATACGATTCTACTCATGGTGTTTTCAACGGAACCATCAAGGTTCTCAGTGATTCAACCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTTAGCAAAAGGGACCCTGCAGATATCCCTTGGGGTGATTACGGGGCTGAATATGTTGTTGAGTCCTCTGGAGTTTTCACTTCAAAAGAGAAGGCGTCAGCACACTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAATGAAAAAACTTACAAGCCGACAATGGATATTGTTTCCAACGCAAGTTGTACAACCAATTGTCTTGCACCTCTCGCAAAGGTTGTTCATGAGGAATTTGGCATTGTTGAAGGTCTAATGACTACTGTGCATGCAACAACAGCAACACAAAAGACTGTCGATGGCCCTTCAATGAAGGATTGGAGAGGAGGCCGTGGTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGCAAAGTACTTCCAGAGCTAAATGGAAAGCTTACTGGAATGGCTTTCCGTGTCCCAACACCCAATGTATCTGTTGTGGACTTAACTTGCCGACTTCAAAAGACTGCTTCTTATGAAGATGTAAAGGCAGCAGTAAAGTATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGATGAGGATGTTGTCTCTACTGATTTTCTTGGTGACTCGAGGTCAAGTATTTTTGATGCAAAGGCTGGAATAGGTCTCAGTGCCTCATTCGTGAAGCTGCAACCGAGTACTGGACCTTATCGAGCACATGGCAATGGTTTCAGCCTTCAACTAAATGTTAGTCTTGTCATCGGCAAAGCCCCGAGTTCTTGTGATTTTGATCATAATCCTAGAACAGATTCCTTCAGAACAGAGCTTTTGTCCCCCGAGAGCGTGGCTGCGGGAACAGATGGAATGGTAACGAAGGTGCCCTCGTGGCGACTCAATATGGACGAGTTCCGCTTGCCTACTGCAAACACGAGGTCTCATCATGGCATTGTTTATTACTGGAAGTCATGGAACAGGCAGAGAAAGGTTGCTAAGTATTATGAAAGGCAGGAAAGTCTTCTCAAAGGATTCAATGAAGTTGACTCCTACAATGAACTGGGTATCGTGCCTGGAACTTTAACTGAGGATGAAAAGAAGCAAGAGGCGATCAGTGAGAGACGGGCAATATATGCATCCAACATAGCCAACATGTTGATCTTCATCGCTAAAGTTTATGCTTCAGTTGAAAGCAGATCTCTAGCAGTTATAGCTTCAACACTAGATTCCCTGTTGGATCTTTTATCGGGGTTCATATTATGGTTTACAGCTAATGCTATGAGAAAGCCAAATCAGTACCGTTATCCTATCGGCAAGAATCGAATGCAACCAGTGGGAATTGTTGTGTTTGCATCAGTCATGGCAACTCTTGGAATACAAATATTGCTTGAATCAGCTAGAGAACTTATTTCAAAGGTTCAACCGGATAGAGATCCAGATAAAGTAAAATGGATGGTTGGAATAATGGCATCCGTGACAGTAGTGAAATTTTGCCTTACAATATACTGTCGTAGATTCACAAATGAAATCATCAGAGCCTATGCCCAAGACCATTTCTTTGATGTAATTACCAATTCAATTGGTCTTGCGACTGCCCTTTTGGCCATCAAATTCTACTGGTGGCTTGATCCCCTTGGGGCTATCCTAATAGCATTGTACACTATCAGCAACTGGTCGAAGACCGTAATGGAAAATGTATGGTCGCTAATAGGGAGGACAGCCCCACCAGACTACTTGGCCAAGCTAACATATCTAGTATGGAATCATCACGAGGAAATCAAACATATTGATACAGTGAGAGCGTATACCTTCGGATGCAACTATTTTGTGGAGGTGGACATAGTGTTGCCTGGGGAAACTTCTCTAAGTCAAGCACATGACATTGGAGAAACACTGCAAGATAAACTTGAACAGCTTGATGAGGTTGATCGAGCTTTCGTTCATGTGGACTTTGAGTTCACTCATAAGCCAGAGCACAAGCCTAAAGCTTCATAG | 4023 | 46.51 | MASAASRATFHLLPTTSSSTSSTRSALLQFSPSTTSSSSIRLRSSATHRLGFAAADPLFSLHVASKIRSFGGKASRGVVSMAKKSVGDLSAADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLTEKGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLDLATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDVGPDSVKTFNDALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGVANVMSHISTGGGASLELLEGKELPGVLALDEAVPVTVVFAFWSASFLVFCRHFFFDHRRSYTTMAFSSSLARSAVSSSLIEASRSDLSPSDCRKASCVGSSLKLQSGVFGTTISSGASSLQLRSSKVRTVQPIKATATEAPPTIQKTPSGGKTKIGINGFGRIGRLVLRIATSRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGVFNGTIKVLSDSTLEINGKQIKVVSKRDPADIPWGDYGAEYVVESSGVFTSKEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPTMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLQKTASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSASFVKLQPSTGPYRAHGNGFSLQLNVSLVIGKAPSSCDFDHNPRTDSFRTELLSPESVAAGTDGMVTKVPSWRLNMDEFRLPTANTRSHHGIVYYWKSWNRQRKVAKYYERQESLLKGFNEVDSYNELGIVPGTLTEDEKKQEAISERRAIYASNIANMLIFIAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTANAMRKPNQYRYPIGKNRMQPVGIVVFASVMATLGIQILLESARELISKVQPDRDPDKVKWMVGIMASVTVVKFCLTIYCRRFTNEIIRAYAQDHFFDVITNSIGLATALLAIKFYWWLDPLGAILIALYTISNWSKTVMENVWSLIGRTAPPDYLAKLTYLVWNHHEEIKHIDTVRAYTFGCNYFVEVDIVLPGETSLSQAHDIGETLQDKLEQLDEVDRAFVHVDFEFTHKPEHKPKAS | 1340 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 35433191 | 35447827 | + | CrPI670011_02g021790.1 | Cre02g2179 | 491460 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre02g2179 | 1340 | FunFam | Metal tolerance protein 11 | 1052 | 1245 | - | - | |
| Cre02g2179 | 1340 | ProSitePatterns | Glyceraldehyde 3-phosphate dehydrogenase active site. | 748 | 755 | IPR020830 | GO:0016620(InterPro) | |
| Cre02g2179 | 1340 | NCBIfam | cation diffusion facilitator family transporter | 1050 | 1326 | IPR002524 | GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre02g2179 | 1340 | Gene3D | - | 268 | 455 | IPR015824 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | PANTHER | PHOSPHOGLYCERATE KINASE | 76 | 480 | IPR001576 | GO:0004618(InterPro)|GO:0004618(PANTHER)|GO:0005524(PANTHER)|GO:0005829(PANTHER)|GO:0006094(PANTHER)|GO:0006096(InterPro)|GO:0006096(PANTHER)|GO:0043531(PANTHER) | |
| Cre02g2179 | 1340 | SMART | gp_dh_n_7 | 601 | 750 | IPR020828 | GO:0051287(InterPro) | |
| Cre02g2179 | 1340 | FunFam | Metal tolerance protein 11 | 1248 | 1328 | - | - | |
| Cre02g2179 | 1340 | SUPERFAMILY | Phosphoglycerate kinase | 88 | 479 | IPR036043 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | Gene3D | - | 154 | 480 | IPR015824 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | FunFam | Glyceraldehyde-3-phosphate dehydrogenase | 601 | 759 | - | - | |
| Cre02g2179 | 1340 | FunFam | Phosphoglycerate kinase | 253 | 469 | - | - | |
| Cre02g2179 | 1340 | Gene3D | - | 602 | 747 | - | - | |
| Cre02g2179 | 1340 | ProSitePatterns | Phosphoglycerate kinase signature. | 98 | 108 | IPR015911 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | NCBIfam | glyceraldehyde-3-phosphate dehydrogenase, type I | 602 | 900 | IPR006424 | GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro) | |
| Cre02g2179 | 1340 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 600 | 766 | IPR036291 | - | |
| Cre02g2179 | 1340 | Gene3D | Dihydrodipicolinate Reductase; domain 2 | 748 | 908 | - | - | |
| Cre02g2179 | 1340 | FunFam | Phosphoglycerate kinase | 16 | 152 | - | - | |
| Cre02g2179 | 1340 | CDD | Phosphoglycerate_kinase | 92 | 479 | IPR001576 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | SUPERFAMILY | Cation efflux protein transmembrane domain-like | 1049 | 1247 | IPR027469 | - | |
| Cre02g2179 | 1340 | Gene3D | Cation efflux protein transmembrane domain | 1049 | 1245 | IPR027469 | - | |
| Cre02g2179 | 1340 | FunFam | Glyceraldehyde-3-phosphate dehydrogenase | 749 | 911 | - | - | |
| Cre02g2179 | 1340 | Pfam | Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | 602 | 703 | IPR020828 | GO:0051287(InterPro) | |
| Cre02g2179 | 1340 | SUPERFAMILY | Cation efflux protein cytoplasmic domain-like | 1250 | 1326 | IPR036837 | - | |
| Cre02g2179 | 1340 | SUPERFAMILY | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 749 | 908 | - | - | |
| Cre02g2179 | 1340 | Gene3D | Cation efflux protein, cytoplasmic domain | 1252 | 1327 | IPR036837 | - | |
| Cre02g2179 | 1340 | Hamap | Phosphoglycerate kinase [pgk]. | 88 | 479 | IPR001576 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | PRINTS | Phosphoglycerate kinase family signature | 93 | 109 | IPR001576 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | PRINTS | Phosphoglycerate kinase family signature | 220 | 242 | IPR001576 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | PRINTS | Phosphoglycerate kinase family signature | 251 | 273 | IPR001576 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | PRINTS | Phosphoglycerate kinase family signature | 432 | 443 | IPR001576 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | PRINTS | Phosphoglycerate kinase family signature | 192 | 207 | IPR001576 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | PRINTS | Phosphoglycerate kinase family signature | 455 | 472 | IPR001576 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | PRINTS | Phosphoglycerate kinase family signature | 396 | 421 | IPR001576 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | PRINTS | Phosphoglycerate kinase family signature | 274 | 293 | IPR001576 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | PRINTS | Phosphoglycerate kinase family signature | 115 | 137 | IPR001576 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | Pfam | Dimerisation domain of Zinc Transporter | 1256 | 1326 | IPR027470 | - | |
| Cre02g2179 | 1340 | Pfam | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain | 755 | 908 | IPR020829 | GO:0016620(InterPro) | |
| Cre02g2179 | 1340 | Pfam | Cation efflux family | 1055 | 1245 | IPR002524 | GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre02g2179 | 1340 | Gene3D | - | 62 | 152 | IPR015824 | GO:0004618(InterPro)|GO:0006096(InterPro) | |
| Cre02g2179 | 1340 | Pfam | Phosphoglycerate kinase | 91 | 469 | IPR001576 | GO:0004618(InterPro)|GO:0006096(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre02g2179 | Cre-Chr2:35433191 | Cre11g1159 | Cre-Chr11:9302163 | 2.20E-129 | dispersed | |
| Cre01g0211 | Cre-Chr1:1480298 | Cre02g2179 | Cre-Chr2:35433191 | 3.60E-188 | transposed | |
| Cre02g1661 | Cre-Chr2:29573080 | Cre02g2179 | Cre-Chr2:35433191 | 1.80E-119 | transposed | |
| Cre03g1674 | Cre-Chr3:33320912 | Cre02g2179 | Cre-Chr2:35433191 | 5.40E-95 | transposed | |
| Cre01g0209 | Cre-Chr1:1462913 | Cre02g2179 | Cre-Chr2:35433191 | 1.90E-182 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre02g2179 | K00927 | - | csv:101215670 | 879.782 |