Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2179 ATGGCGTCTGCAGCTTCCCGTGCCACTTTCCATCTCCTTCCCACCACATCCTCTTCCACTTCTTCAACCCGTTCTGCCCTTCTTCAATTTTCCCCATCCACCACTTCCTCTTCCTCAATTCGCCTCCGCAGCTCCGCCACTCACCGCCTTGGCTTTGCCGCCGCAGACCCGCTTTTCTCCCTCCATGTCGCTTCCAAGATTCGGTCGTTTGGAGGCAAGGCTTCGAGGGGTGTGGTGTCCATGGCCAAGAAGAGCGTTGGGGATTTGTCTGCTGCTGACTTGAAGGGGAAGAAAGTGTTCGTCAGGGCTGATCTGAACGTGCCCTTGGATGATAATCAGAATATTACTGATGACACTAGGATCAGGGCTGCTATTCCTACAATCAAGCATTTGACAGAGAAGGGAGCTAAAGTCATTCTCTCCAGTCATCTGGGAAGACCAAAAGGTGTGACTCCAAAGTACAGCTTGGCACCTCTTGTGCCTAGGCTTTCTGAACTCCTTGGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGTCCCGAGGTTGAAAAGTTGGTTGCTTCCCTGCCCGAGGGTGGCGTCCTTCTCCTTGAAAATGTCAGATTCTACAAGGAAGAAGAGAAAAATGAACCCGAGTTTGCAAAGAAGCTTGCTTCTCTAGCTGATCTTTATGTGAACGATGCATTTGGAACTGCCCATAGAGCTCATGCTTCAACCGAGGGAGTCACCAAGTTTTTGAAGCCATCCGTAGCTGGTTTCCTCTTGCAGAAGGAACTTGACTATCTAGTGGGGGCCGTGTCAAGCCCAAAGAGGCCATTTGCTGCTATTGTTGGTGGTTCAAAGGTGTCTTCAAAGATTGGAGTGATTGAGTCACTTCTAGAAAAGTGTGACATCCTACTCCTCGGTGGTGGAATGATCTTTACATTTTACAAGGCACAGGGACTTTCCGTTGGTTCATCTTTGGTGGAAGAGGATAAGCTAGATTTAGCAACCTCCCTCCTCGCGAAAGCCAAGGCGAAAGGAGTATCCCTTTTGTTACCAACTGATGTCGTCATTGCAGACAAGTTTGCTCCCGATGCAAACAGCAAGATTGTCCCAGCATCTGCCATCCCTGATGGATGGATGGGGTTGGACGTTGGGCCAGATTCCGTAAAGACATTCAATGATGCTTTGGACACTACCCAAACTATCATCTGGAATGGACCAATGGGAGTGTTCGAATTCGACAAGTTTGCAGTCGGCACCGAGGCGATTGCTAAGAAACTTGCGGAGCTCAGCGGAAAGGGGGTGACAACCATCATCGGTGGTGGAGACTCGGTTGCAGCTGTGGAGAAGGTGGGAGTTGCGAACGTCATGAGCCACATTTCGACTGGTGGGGGTGCTAGTTTGGAGTTGTTGGAAGGCAAAGAGCTACCCGGTGTCCTTGCTCTTGACGAGGCCGTACCTGTCACCGTGGTTTTTGCGTTTTGGAGCGCATCCTTTTTGGTCTTTTGCCGCCATTTCTTCTTCGATCATCGAAGAAGCTATACGACCATGGCTTTCTCATCCTCCCTCGCTCGATCTGCCGTTTCCTCTTCTCTGATCGAAGCTTCTCGTTCTGACTTGTCGCCGTCCGACTGCCGGAAGGCTTCATGCGTCGGGAGCTCTTTGAAGCTTCAATCTGGTGTTTTTGGAACTACTATCTCGAGTGGGGCGTCTTCTTTACAGTTAAGGTCATCTAAAGTTCGAACCGTCCAACCCATCAAAGCTACGGCCACGGAGGCGCCTCCGACGATCCAAAAAACTCCGAGCGGTGGGAAGACCAAGATAGGAATCAATGGCTTTGGTCGAATTGGAAGACTGGTGTTGCGAATTGCAACCTCCAGAGATGATATCGATGTTGTAGCAGTTAATGATCCATTTGTTGATGCCAAGTACATGGCTTACATGTTCAAATACGATTCTACTCATGGTGTTTTCAACGGAACCATCAAGGTTCTCAGTGATTCAACCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTTAGCAAAAGGGACCCTGCAGATATCCCTTGGGGTGATTACGGGGCTGAATATGTTGTTGAGTCCTCTGGAGTTTTCACTTCAAAAGAGAAGGCGTCAGCACACTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAATGAAAAAACTTACAAGCCGACAATGGATATTGTTTCCAACGCAAGTTGTACAACCAATTGTCTTGCACCTCTCGCAAAGGTTGTTCATGAGGAATTTGGCATTGTTGAAGGTCTAATGACTACTGTGCATGCAACAACAGCAACACAAAAGACTGTCGATGGCCCTTCAATGAAGGATTGGAGAGGAGGCCGTGGTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGCAAAGTACTTCCAGAGCTAAATGGAAAGCTTACTGGAATGGCTTTCCGTGTCCCAACACCCAATGTATCTGTTGTGGACTTAACTTGCCGACTTCAAAAGACTGCTTCTTATGAAGATGTAAAGGCAGCAGTAAAGTATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGATGAGGATGTTGTCTCTACTGATTTTCTTGGTGACTCGAGGTCAAGTATTTTTGATGCAAAGGCTGGAATAGGTCTCAGTGCCTCATTCGTGAAGCTGCAACCGAGTACTGGACCTTATCGAGCACATGGCAATGGTTTCAGCCTTCAACTAAATGTTAGTCTTGTCATCGGCAAAGCCCCGAGTTCTTGTGATTTTGATCATAATCCTAGAACAGATTCCTTCAGAACAGAGCTTTTGTCCCCCGAGAGCGTGGCTGCGGGAACAGATGGAATGGTAACGAAGGTGCCCTCGTGGCGACTCAATATGGACGAGTTCCGCTTGCCTACTGCAAACACGAGGTCTCATCATGGCATTGTTTATTACTGGAAGTCATGGAACAGGCAGAGAAAGGTTGCTAAGTATTATGAAAGGCAGGAAAGTCTTCTCAAAGGATTCAATGAAGTTGACTCCTACAATGAACTGGGTATCGTGCCTGGAACTTTAACTGAGGATGAAAAGAAGCAAGAGGCGATCAGTGAGAGACGGGCAATATATGCATCCAACATAGCCAACATGTTGATCTTCATCGCTAAAGTTTATGCTTCAGTTGAAAGCAGATCTCTAGCAGTTATAGCTTCAACACTAGATTCCCTGTTGGATCTTTTATCGGGGTTCATATTATGGTTTACAGCTAATGCTATGAGAAAGCCAAATCAGTACCGTTATCCTATCGGCAAGAATCGAATGCAACCAGTGGGAATTGTTGTGTTTGCATCAGTCATGGCAACTCTTGGAATACAAATATTGCTTGAATCAGCTAGAGAACTTATTTCAAAGGTTCAACCGGATAGAGATCCAGATAAAGTAAAATGGATGGTTGGAATAATGGCATCCGTGACAGTAGTGAAATTTTGCCTTACAATATACTGTCGTAGATTCACAAATGAAATCATCAGAGCCTATGCCCAAGACCATTTCTTTGATGTAATTACCAATTCAATTGGTCTTGCGACTGCCCTTTTGGCCATCAAATTCTACTGGTGGCTTGATCCCCTTGGGGCTATCCTAATAGCATTGTACACTATCAGCAACTGGTCGAAGACCGTAATGGAAAATGTATGGTCGCTAATAGGGAGGACAGCCCCACCAGACTACTTGGCCAAGCTAACATATCTAGTATGGAATCATCACGAGGAAATCAAACATATTGATACAGTGAGAGCGTATACCTTCGGATGCAACTATTTTGTGGAGGTGGACATAGTGTTGCCTGGGGAAACTTCTCTAAGTCAAGCACATGACATTGGAGAAACACTGCAAGATAAACTTGAACAGCTTGATGAGGTTGATCGAGCTTTCGTTCATGTGGACTTTGAGTTCACTCATAAGCCAGAGCACAAGCCTAAAGCTTCATAG 4023 46.51 MASAASRATFHLLPTTSSSTSSTRSALLQFSPSTTSSSSIRLRSSATHRLGFAAADPLFSLHVASKIRSFGGKASRGVVSMAKKSVGDLSAADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLTEKGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLDLATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDVGPDSVKTFNDALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGVANVMSHISTGGGASLELLEGKELPGVLALDEAVPVTVVFAFWSASFLVFCRHFFFDHRRSYTTMAFSSSLARSAVSSSLIEASRSDLSPSDCRKASCVGSSLKLQSGVFGTTISSGASSLQLRSSKVRTVQPIKATATEAPPTIQKTPSGGKTKIGINGFGRIGRLVLRIATSRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGVFNGTIKVLSDSTLEINGKQIKVVSKRDPADIPWGDYGAEYVVESSGVFTSKEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPTMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLQKTASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSASFVKLQPSTGPYRAHGNGFSLQLNVSLVIGKAPSSCDFDHNPRTDSFRTELLSPESVAAGTDGMVTKVPSWRLNMDEFRLPTANTRSHHGIVYYWKSWNRQRKVAKYYERQESLLKGFNEVDSYNELGIVPGTLTEDEKKQEAISERRAIYASNIANMLIFIAKVYASVESRSLAVIASTLDSLLDLLSGFILWFTANAMRKPNQYRYPIGKNRMQPVGIVVFASVMATLGIQILLESARELISKVQPDRDPDKVKWMVGIMASVTVVKFCLTIYCRRFTNEIIRAYAQDHFFDVITNSIGLATALLAIKFYWWLDPLGAILIALYTISNWSKTVMENVWSLIGRTAPPDYLAKLTYLVWNHHEEIKHIDTVRAYTFGCNYFVEVDIVLPGETSLSQAHDIGETLQDKLEQLDEVDRAFVHVDFEFTHKPEHKPKAS 1340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35433191 35447827 + CrPI670011_02g021790.1 Cre02g2179 491460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2179 1340 FunFam Metal tolerance protein 11 1052 1245 - -
Cre02g2179 1340 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 748 755 IPR020830 GO:0016620(InterPro)
Cre02g2179 1340 NCBIfam cation diffusion facilitator family transporter 1050 1326 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre02g2179 1340 Gene3D - 268 455 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 PANTHER PHOSPHOGLYCERATE KINASE 76 480 IPR001576 GO:0004618(InterPro)|GO:0004618(PANTHER)|GO:0005524(PANTHER)|GO:0005829(PANTHER)|GO:0006094(PANTHER)|GO:0006096(InterPro)|GO:0006096(PANTHER)|GO:0043531(PANTHER)
Cre02g2179 1340 SMART gp_dh_n_7 601 750 IPR020828 GO:0051287(InterPro)
Cre02g2179 1340 FunFam Metal tolerance protein 11 1248 1328 - -
Cre02g2179 1340 SUPERFAMILY Phosphoglycerate kinase 88 479 IPR036043 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 Gene3D - 154 480 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 FunFam Glyceraldehyde-3-phosphate dehydrogenase 601 759 - -
Cre02g2179 1340 FunFam Phosphoglycerate kinase 253 469 - -
Cre02g2179 1340 Gene3D - 602 747 - -
Cre02g2179 1340 ProSitePatterns Phosphoglycerate kinase signature. 98 108 IPR015911 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 602 900 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Cre02g2179 1340 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 600 766 IPR036291 -
Cre02g2179 1340 Gene3D Dihydrodipicolinate Reductase; domain 2 748 908 - -
Cre02g2179 1340 FunFam Phosphoglycerate kinase 16 152 - -
Cre02g2179 1340 CDD Phosphoglycerate_kinase 92 479 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 SUPERFAMILY Cation efflux protein transmembrane domain-like 1049 1247 IPR027469 -
Cre02g2179 1340 Gene3D Cation efflux protein transmembrane domain 1049 1245 IPR027469 -
Cre02g2179 1340 FunFam Glyceraldehyde-3-phosphate dehydrogenase 749 911 - -
Cre02g2179 1340 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 602 703 IPR020828 GO:0051287(InterPro)
Cre02g2179 1340 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 1250 1326 IPR036837 -
Cre02g2179 1340 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 749 908 - -
Cre02g2179 1340 Gene3D Cation efflux protein, cytoplasmic domain 1252 1327 IPR036837 -
Cre02g2179 1340 Hamap Phosphoglycerate kinase [pgk]. 88 479 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 PRINTS Phosphoglycerate kinase family signature 93 109 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 PRINTS Phosphoglycerate kinase family signature 220 242 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 PRINTS Phosphoglycerate kinase family signature 251 273 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 PRINTS Phosphoglycerate kinase family signature 432 443 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 PRINTS Phosphoglycerate kinase family signature 192 207 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 PRINTS Phosphoglycerate kinase family signature 455 472 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 PRINTS Phosphoglycerate kinase family signature 396 421 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 PRINTS Phosphoglycerate kinase family signature 274 293 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 PRINTS Phosphoglycerate kinase family signature 115 137 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 Pfam Dimerisation domain of Zinc Transporter 1256 1326 IPR027470 -
Cre02g2179 1340 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 755 908 IPR020829 GO:0016620(InterPro)
Cre02g2179 1340 Pfam Cation efflux family 1055 1245 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre02g2179 1340 Gene3D - 62 152 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Cre02g2179 1340 Pfam Phosphoglycerate kinase 91 469 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2179 K00927 - - csv:101215670 879.782
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2179 Cre-Chr2:35433191 Cre11g1159 Cre-Chr11:9302163 2.20E-129 dispersed
Cre01g0211 Cre-Chr1:1480298 Cre02g2179 Cre-Chr2:35433191 3.60E-188 transposed
Cre02g1661 Cre-Chr2:29573080 Cre02g2179 Cre-Chr2:35433191 1.80E-119 transposed
Cre03g1674 Cre-Chr3:33320912 Cre02g2179 Cre-Chr2:35433191 5.40E-95 transposed
Cre01g0209 Cre-Chr1:1462913 Cre02g2179 Cre-Chr2:35433191 1.90E-182 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1151 Blo04g00461 . . . . . . . . . . . . . . . Cpe16g00708 . . . . . . . Cla02g01828 Cam02g1937 Cec02g1964 Cco02g2003 Clacu02g1917 Cmu02g1866 Cre02g2179 . . . . . . . Cme11g01635 . . . . Bpe15g00920 . Bma03g00494 . . . . . . . . . Cpe05g01032 Bhi10g00937 . . . . . . . . . . . . . . Csa06g01150 Chy11g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005363 3 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40