Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2183 ATGCCTATGACGGTCGCTGCAAGAGCAATCGCAGCAGCTCGATCAATGGCGCGATCGAGCAGTTTCCCTCTAAAATCTCCATCTTCTTATGTGTTCGCTGCGCAGAAATCTCACTCCCACACTCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGCATCGCTACTCGTCTTCACAGTTCTGGATTGTTACGAAGCCAAGGCCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCATTGAGGTTCACAATCCAGCTAATGGTGAAGTTATAACCAATGTCCCGCTCATGGGCAAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGCAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGATTGGACAACTGATAACCTTAGAGCAAGGCAAACCCTTAAAGGAAGCTGTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAGTTCTATTCCGAGGAAGCAAAACGGATATATGGTGACATAATTTCACCAACTATAGCTGATCGTCGAATTTTGGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTGTTACCCCTTGGAACTTTCCGTTGGCTATGATTACGCGGAAGGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCCTCTGAGCTTACCCCCTTGACAGCTTTAGCAGCAGCCGAGCTCTCACTTCAAGCTGGAATTCCCCCAGGTGTTGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGCGATGCTATACTCGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCTGGAACTGTTAAAAGGGTGTCCTTTGAACTTGGTGGTAATGCCCCTTGCATAGTATTTGATGACGCAGATGTGGATGTTGCAGTAAAAGGAGCTGATTATGGCTTTGAAACAATCCTGCTCAACATGATTAATGTAATTAGCACTTGCCATGATGCATCAATATCTACTTGTAAGTGCATACTACCTAGGGATGTGGGTCTATTCAACCACGACTCTTTCCTGCAATTGCAGCAAAGTTCCGAAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGTATTAACAGATGTATACTTCAGTTCTGAAGGATGCTTCTTTTGCTCGTTTAAAAGATGGCTTACTGATATTGGAATCTACGAGAAATTTACAAATGCTTTCTCAAAAGCTGTGCAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCCGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCACTACAAAGGGAGCAAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTTTGAGCCTACAGTTATTGCTGACGTGAATAGTGACATGCTTGTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCCTTACTGCAATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGACTAGCTGCTTACATATTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATACGGAATGGTTGGTGTTAATGAAGGCCTAATTTCTACAGAGGTGATGGTCCCTCCCTTGAATTTTGGAAAGAACGGGGATGGAAATTTGGCTTGCCCCCTCGATGCTTGGCTGAGGAAGTTGGGGATGGTGGTGCTGGGGACCCAATGTCAAATTTCTCTTTTGAGGATCTTTAGGAGGCCAGGGCTTGTTCCTCCTTACCTGTCCAAGGTGGCTCCATTTGGTGGCGTTAAGGAGTCAGGCCTTGGAAGGGAAGGGTCGAAATATGGGATGGACGAGTATCTTGAGCTGAAATATGTTTGCTTGGGGAACATGGACCGCCATTGA 1998 45.5 MPMTVAARAIAAARSMARSSSFPLKSPSSYVFAAQKSHSHTLLIRQMSSEAQSIATRLHSSGLLRSQGLIGGKWIDAYDGKTIEVHNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLIAHKEEIGQLITLEQGKPLKEAVGETNYGASFIEFYSEEAKRIYGDIISPTIADRRILVLKQPVGVVGVVTPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSFELGGNAPCIVFDDADVDVAVKGADYGFETILLNMINVISTCHDASISTCKCILPRDVGLFNHDSFLQLQQSSEIVDRLVFVPIEFLFKKVLTDVYFSSEGCFFCSFKRWLTDIGIYEKFTNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHSLGMTFFEPTVIADVNSDMLVSREEVFGPVAPLLQFRTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTEVMVPPLNFGKNGDGNLACPLDAWLRKLGMVVLGTQCQISLLRIFRRPGLVPPYLSKVAPFGGVKESGLGREGSKYGMDEYLELKYVCLGNMDRH 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35470144 35480991 + CrPI670011_02g021830.1 Cre02g2183 491464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2183 665 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 309 316 IPR029510 GO:0016491(InterPro)
Cre02g2183 665 FunFam Succinate-semialdehyde dehydrogenase I 393 570 - -
Cre02g2183 665 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 386 567 IPR016163 GO:0016620(InterPro)
Cre02g2183 665 FunFam Succinate-semialdehyde dehydrogenase I 80 337 - -
Cre02g2183 665 FunFam Aldehyde dehydrogenase, putative 629 655 - -
Cre02g2183 665 CDD ALDH_F5_SSADH_GabD 85 659 - -
Cre02g2183 665 SUPERFAMILY ALDH-like 104 661 IPR016161 GO:0016491(InterPro)
Cre02g2183 665 Pfam Aldehyde dehydrogenase family 74 332 IPR015590 GO:0016491(InterPro)
Cre02g2183 665 Pfam Aldehyde dehydrogenase family 628 657 IPR015590 GO:0016491(InterPro)
Cre02g2183 665 Pfam Aldehyde dehydrogenase family 405 574 IPR015590 GO:0016491(InterPro)
Cre02g2183 665 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 57 349 IPR016162 GO:0016491(InterPro)
Cre02g2183 665 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 618 663 IPR016162 GO:0016491(InterPro)
Cre02g2183 665 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 573 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2183 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2183 Cre-Chr2:35470144 Cre06g2558 Cre-Chr6:33193422 1.60E-72 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1169 . . . . . . . . . . . . . . . . Cpe16g00704 . . . . . . . Cla02g01832 Cam02g1941 Cec02g1968 Cco02g2007 Clacu02g1921 Cmu02g1870 Cre02g2183 . . . . . . . Cme11g01643 . . . . . . . . Sed05g3313 . . . . . . . Cpe05g01029 Bhi10g00929 Tan05g0579 Cmetu11g2423 . Hepe08g0653 . . . . . . . . . . Csa06g01146 Chy11g01046 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre06g1867 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.6 5.7e-211 730.7
Cre02g1980 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 4.3e-158 555.1
Cre06g2558 . 72 556 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 4.9e-154 541.6
Cre06g2558 . 55 556 Aldehyde Dehydrogenase Gene Family AT3G48000 80.5 7.4e-249 856.7
Cre02g1980 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 4.0e-247 850.9
Cre06g1867 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.6 1.3e-160 563.5
Cre02g1980 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 75.7 4.7e-171 597.8
Cre06g2558 . 51 400 Aldehyde Dehydrogenase Gene Family AT1G23800 77.7 2.5e-164 575.5
Cre06g1867 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 9.3e-103 370.9
Cre11g1995 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.6 1.7e-181 632.9
Cre11g1996 . 7 570 Aldehyde Dehydrogenase Gene Family AT4G34240 53.5 1.3e-165 580.1
Cre11g1996 . 153 568 Aldehyde Dehydrogenase Gene Family AT1G44170 71.4 2.6e-177 618.6
Cre11g1995 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 5.9e-177 617.5
Cre02g2627 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 1.8e-117 419.9
Cre07g1260 . 84 498 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 9.9e-116 414.1
Cre07g1260 . 21 500 Aldehyde Dehydrogenase Gene Family AT4G36250 62.9 1.5e-184 642.9
Cre02g2627 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 2.2e-159 559.3
Cre02g2183 . 37 665 Aldehyde Dehydrogenase Gene Family AT1G79440 60.0 5.2e-207 717.6
Cre01g0800 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 1.4e-240 829.3
Cre04g1447 . 259 693 Aldehyde Dehydrogenase Gene Family AT2G14170 68.3 2.5e-181 632.5
Cre06g2537 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.6 1.9e-251 865.1
Cre06g2537 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.3 3.5e-253 870.9
Cre02g2024 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 1.0e-268 922.5
Cre01g1329 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 77.8 1.9e-260 895.2
Cre06g1221 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.6e-276 948.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42