Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g2184 | ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGCCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTCGGAGGCCCCGATAAAGCCACCCCGAAAACCATCATGAGAGTTATGGGCGTCAAGGGTCTCACTCTCTACCATCTCAAGAGCCACCTCCAGAAGTTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAAAGAAACAGTGGATCTTCTTCCAGCTTAATGGACCGTAATATGAACGAAATGCAAATGGAGGTCCAGAGAAGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGGCCGCCGCCAGCGCCGCCGCTGGCCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAATCTTGTCTCAGAGGCTGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCCGAACAGCCGCCGCCTCCACCGCCTCTCATTGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCAGGCGCAGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCTCCTTCCATCGGCGGCCCAGCCGAGTTGGATCCCTTACAATTGGAAATGTATGAATCCAAACCGCCACCGCCACCACCACTACTCGCTGTTGGCAACAACGCAATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACCGCGGTCGGGGCATTCCGACGAAAGGGTGAATAATAATGGTATGCCTAACAATAGCAACCCTACAATGTCACAGCCACAGGGAAGAAATTCATCATTTGGTTAA | 1092 | 51.37 | MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRNMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASAAAGPFKTTSNNMGTTTNLVSEAAIKDFISPPPPHHTFPPFQDMNNLFNSEQPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTPSATLAPPPPSIGGPAELDPLQLEMYESKPPPPPPLLAVGNNAMNEKKFDMTLKLERSSPPRSGHSDERVNNNGMPNNSNPTMSQPQGRNSSFG | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 35487802 | 35491711 | + | CrPI670011_02g021840.1 | Cre02g2184 | 491465 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g2184 | 363 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 30 | 90 | IPR017930 | - | |
Cre02g2184 | 363 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cre02g2184 | 363 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 33 | 88 | IPR006447 | GO:0003677(InterPro) | |
Cre02g2184 | 363 | MobiDBLite | consensus disorder prediction | 334 | 363 | - | - | |
Cre02g2184 | 363 | SUPERFAMILY | Homeodomain-like | 32 | 88 | IPR009057 | - | |
Cre02g2184 | 363 | MobiDBLite | consensus disorder prediction | 268 | 287 | - | - | |
Cre02g2184 | 363 | Gene3D | - | 32 | 90 | - | - | |
Cre02g2184 | 363 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 8 | 201 | IPR046955 | GO:0003700(InterPro) | |
Cre02g2184 | 363 | Pfam | Myb-like DNA-binding domain | 35 | 85 | IPR001005 | - | |
Cre02g2184 | 363 | MobiDBLite | consensus disorder prediction | 318 | 333 | - | - | |
Cre02g2184 | 363 | Pfam | MYB-CC type transfactor, LHEQLE motif | 129 | 168 | IPR025756 | - | |
Cre02g2184 | 363 | FunFam | Myb family transcription factor | 32 | 90 | - | - | |
Cre02g2184 | 363 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cre02g2184 | 363 | MobiDBLite | consensus disorder prediction | 293 | 363 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2184 | Cre-Chr2:35487802 | Cre05g0421 | Cre-Chr5:3812518 | 5.30E-41 | dispersed | |
Cre11g1402 | Cre-Chr11:18190733 | Cre02g2184 | Cre-Chr2:35487802 | 2.40E-28 | transposed | |
Cre01g0200 | Cre-Chr1:1398275 | Cre02g2184 | Cre-Chr2:35487802 | 6.40E-85 | wgd | |
Cre11g2062 | Cre-Chr11:32419062 | Cre02g2184 | Cre-Chr2:35487802 | 1.30E-13 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53213 | PF00249 | Myb_DNA-binding | 2.00E-06 | CL0123 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g2184 | - | - | - | 0.0 |