Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2184 ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGCCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTCGGAGGCCCCGATAAAGCCACCCCGAAAACCATCATGAGAGTTATGGGCGTCAAGGGTCTCACTCTCTACCATCTCAAGAGCCACCTCCAGAAGTTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAAAGAAACAGTGGATCTTCTTCCAGCTTAATGGACCGTAATATGAACGAAATGCAAATGGAGGTCCAGAGAAGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAATTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGGCCGCCGCCAGCGCCGCCGCTGGCCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAATCTTGTCTCAGAGGCTGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCCGAACAGCCGCCGCCTCCACCGCCTCTCATTGACTGCCTCAAGAAGCCCAGCCCCTTCATCTCAGGCGCAGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCTCCTTCCATCGGCGGCCCAGCCGAGTTGGATCCCTTACAATTGGAAATGTATGAATCCAAACCGCCACCGCCACCACCACTACTCGCTGTTGGCAACAACGCAATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACCGCGGTCGGGGCATTCCGACGAAAGGGTGAATAATAATGGTATGCCTAACAATAGCAACCCTACAATGTCACAGCCACAGGGAAGAAATTCATCATTTGGTTAA 1092 51.37 MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRNMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASAAAGPFKTTSNNMGTTTNLVSEAAIKDFISPPPPHHTFPPFQDMNNLFNSEQPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTPSATLAPPPPSIGGPAELDPLQLEMYESKPPPPPPLLAVGNNAMNEKKFDMTLKLERSSPPRSGHSDERVNNNGMPNNSNPTMSQPQGRNSSFG 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35487802 35491711 + CrPI670011_02g021840.1 Cre02g2184 491465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2184 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Cre02g2184 363 MobiDBLite consensus disorder prediction 1 26 - -
Cre02g2184 363 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
Cre02g2184 363 MobiDBLite consensus disorder prediction 334 363 - -
Cre02g2184 363 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Cre02g2184 363 MobiDBLite consensus disorder prediction 268 287 - -
Cre02g2184 363 Gene3D - 32 90 - -
Cre02g2184 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 201 IPR046955 GO:0003700(InterPro)
Cre02g2184 363 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
Cre02g2184 363 MobiDBLite consensus disorder prediction 318 333 - -
Cre02g2184 363 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Cre02g2184 363 FunFam Myb family transcription factor 32 90 - -
Cre02g2184 363 MobiDBLite consensus disorder prediction 1 17 - -
Cre02g2184 363 MobiDBLite consensus disorder prediction 293 363 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2184 Cre-Chr2:35487802 Cre05g0421 Cre-Chr5:3812518 5.30E-41 dispersed
Cre11g1402 Cre-Chr11:18190733 Cre02g2184 Cre-Chr2:35487802 2.40E-28 transposed
Cre01g0200 Cre-Chr1:1398275 Cre02g2184 Cre-Chr2:35487802 6.40E-85 wgd
Cre11g2062 Cre-Chr11:32419062 Cre02g2184 Cre-Chr2:35487802 1.30E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53213 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2184 - - - 0.0