Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2189 ATGTTGTTACCGTTATGGGAATTGGTTTGCAAAACATTTGATTTGGATGAGTTTGTTGTTTCCATAAAGATATCTAGAAGTAGTCGCACGTTTTATGTGTCTAGACTTCTGGATAGAGACAAGATTCCTGGGTGCAATTGGGATCGACTTCCTGAAGCTCGTATAATTTACTGCTCAGCCACCGGTGCATCTGAGCCACGCAATATGGGCTATATGGTCCGACTCGGGCTTTGGGGAACTGGAACTTCCTTTATTGACTTCAGGGATTTTTTAGGTGCATTGGAGCGAGGGGGTGTTGGGGCTTTAGAACTTGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTGTGTCGCACACTTAGCTACCGAGGAGCTGAATTTGAGATCGTGGAAGCACCGCTAGAAGCTGAGATGATGGAAATGTATACATTAGCAGCTGAATTTTGGGCAAAGTTGCGGGTAGAATTGATGACAGCAAGTGCGTATGTTACTAGCGACAAGCCTAGCACCAACCAACTTTGGCGATTATTTTGGGCAAGCCATCAGCGTTTCTTCAGGCATATGTGTATGTCTGCCAAGGTTCCTGCTACTGTGAGACTAGCTAAGCAAGCATTATTGGAAGATAAATGTGTTGTCATTGGCTTGCAAAGTACTGGAGAGGCACGCACTGAGGAAGCTGTGACAAAATATGGCCTTGAGCTTGATGATTTTGTTTCTGGACCTCGAGAACTATTGCTTAAATTTGTGGAAGAAAATTACCCTTTGCCTGAAAAGCCTGAAACTCTACCTGAGGAGGGAAGTGTCAAGGAACTTCAAAGGAAGAGACACTCGGCAACTCCTGGCATATCACTAAATGGGAGGGTAAGGAAAGCTGCAAAGTGGAAACCTCCAAGTGATGTCGAAAGTGATGAAGAATCTGAAACTGATTCTGCTCCCGAATCTACCGAATCAGATGATGAGTTTCAGATTTGTGAGATTTGCAATACTGAAGAGGAAAGGAAAAAGTTACTTCGATGTTCCTGTTGCGAGCAACTTTTTCATCCTGCGTGTCTCGACCCTCCTCTCTTGGATACAGAAACTGCAGAATGGTCATGTCAGTCTTGCAAGGAAAAGACCGATGAGTATCTTAAAGAAAGAAAAGCTGTTATAGCTGAACTTTTGAAAAGGTATGATGCTGCTTCGGATCGTAAGTCTAATTTGTTGGCAATTATTCGTTCATTGAATCTTCCAAACAATCCTTTGGATGATATTATTGATCAGCTTGGTGGTCCTGATAAGGTAGCGGAAATAACTGGAAGAAGGGGAATGCTTGTAAGGGCCCCCAACGGAAAGGGTGTTACTTACCAGCCACGAAACTCGAAGGATGTGACTATGGAGATGGTCAACATGCATGAGAAACAACTGTTTATGGATGGTAAGAAGTTTGTTGCTATCATTTCTGAAGCTGGATCAGCTGGTGTTTCACTGCAGGCCGACAGAAGAGCTGCAAATCAGAAAAGAAGAGTTCATTTTACTTTAGAACTCCCTTGGAGTGCTGATCGAGCCATTCAACAATTTGGACGGACTCATCGCTCTAATCAAGCTTCAGCACCCGAATACAGGCTGCTTTTCACAAATCTCGGTGGAGAACGCAGGTTTGCATCAATTGTTGCCAAGAGATTAGAATCACTTGGAGCCTTAACCCAAGGAGATCGAAGGGCTGGGTTGTCACTTAGTGCATATAATTATGACAGTGCTTATGGGAAAACGGCCTTGACGATGATGTACAGAGGAATAATGGAGCAGGATGCCTTGCCCGTTGAACCTCCTGGTTGCTCATCTGAGAAACCTGATTCAATCCGTGATTTTATTGAGAATGCAAAAGCTGCTCTTAATTCTGTGGGAATAATTAGGGACACCGTACTTGCGTCTGGGAAGGACTTTGGAAAGACCTCTGGTCGTATTGTTGAGTCAGACATGAATGATATTGGACGTTTTCTTAATCGGCTTTTGGGCCTCCCGCCTGAGATTCAAAATAGGATTTTTGAGTTATTTGTCAGCATATTGGATCTTCTAATTCAGAAAGCACGCATTGAAGGGAATCTTGATTCTGGAATTGTCGATATGAGAGCCAATGTTATTGAATTACGAGGAAGTCCAAAGACAGTTCATGTTGATCCTGTCTCTGGGGCATCAACTATGCTGTTTACTTTCTCTTTGGATCGTGGTATAACTTGGGAGTCTGCGAGCATCATTCTTGATGAGAAGCAAAAGGATGGGCTTGGTTCAACCAATGATGGGTTCTATGAATCCAGGAGGGACTGGTTGGGAAGATGCCACATCATATTAGCCTTTGAAAGTTCTGTTCCTGGAATGTATAAAATTGTCCGCCCAGCTGTTGGGGAGTCACTAAGGGAAATGCCTCTCTCTGAGTTACGAAACAAATATCGAAAAACATCATCTTTAGAGAAGGCTCGTAATGGGTGGGAAGATGAGTATGATATTTCCTCAAAACAGTGCATGCACGGACCGAAGTGTAAGCTTGGCAACTTTTGTACGGTTGGCAGGAGAATACAGGAAGTTAATGTTTTGGGTGGCCTTATTCTTCCTGTTTGGGGAACTATTGAAAATGCCCTTTCTAAGCAGGCCCGCCAAAGTCATCAGCGGCTTCGTGTAGTACGTATAGAAACCACAACAGATAAACAGAGAATAGTTGGGCTGTTTGTTCCAAATGCAGCTGTTGAATCAGTGCTTCAAGGTTTAGCATGGGTACAAGATGTAGATGCTTGA 2769 43.55 MLLPLWELVCKTFDLDEFVVSIKISRSSRTFYVSRLLDRDKIPGCNWDRLPEARIIYCSATGASEPRNMGYMVRLGLWGTGTSFIDFRDFLGALERGGVGALELVAMDMKARGMYLCRTLSYRGAEFEIVEAPLEAEMMEMYTLAAEFWAKLRVELMTASAYVTSDKPSTNQLWRLFWASHQRFFRHMCMSAKVPATVRLAKQALLEDKCVVIGLQSTGEARTEEAVTKYGLELDDFVSGPRELLLKFVEENYPLPEKPETLPEEGSVKELQRKRHSATPGISLNGRVRKAAKWKPPSDVESDEESETDSAPESTESDDEFQICEICNTEEERKKLLRCSCCEQLFHPACLDPPLLDTETAEWSCQSCKEKTDEYLKERKAVIAELLKRYDAASDRKSNLLAIIRSLNLPNNPLDDIIDQLGGPDKVAEITGRRGMLVRAPNGKGVTYQPRNSKDVTMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHFTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRAGLSLSAYNYDSAYGKTALTMMYRGIMEQDALPVEPPGCSSEKPDSIRDFIENAKAALNSVGIIRDTVLASGKDFGKTSGRIVESDMNDIGRFLNRLLGLPPEIQNRIFELFVSILDLLIQKARIEGNLDSGIVDMRANVIELRGSPKTVHVDPVSGASTMLFTFSLDRGITWESASIILDEKQKDGLGSTNDGFYESRRDWLGRCHIILAFESSVPGMYKIVRPAVGESLREMPLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLRVVRIETTTDKQRIVGLFVPNAAVESVLQGLAWVQDVDA 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35552393 35571639 + CrPI670011_02g021890.1 Cre02g2189 491470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2189 922 ProSiteProfiles Zinc finger PHD-type profile. 321 371 IPR019787 -
Cre02g2189 922 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 382 IPR013083 -
Cre02g2189 922 MobiDBLite consensus disorder prediction 302 317 - -
Cre02g2189 922 ProSitePatterns Zinc finger PHD-type signature. 324 368 IPR019786 -
Cre02g2189 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 567 IPR027417 -
Cre02g2189 922 Pfam C-terminal domain on Strawberry notch homologue 412 701 IPR026937 -
Cre02g2189 922 Pfam PHD-finger 324 368 IPR019787 -
Cre02g2189 922 MobiDBLite consensus disorder prediction 256 276 - -
Cre02g2189 922 SMART PHD_3 323 369 IPR001965 -
Cre02g2189 922 MobiDBLite consensus disorder prediction 256 317 - -
Cre02g2189 922 SUPERFAMILY FYVE/PHD zinc finger 313 374 IPR011011 -
Cre02g2189 922 Pfam P-loop containing NTP hydrolase pore-1 48 142 IPR039187 -
Cre02g2189 922 PANTHER STRAWBERRY NOTCH-RELATED 48 919 IPR026741 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0031490(PANTHER)|GO:0042393(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2189 K26273 - - csv:101218295 1676.37
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1181 . . . . Bpe07g00481 . . . . . . . . . . . . . . . . . . . Cla02g01841 Cam02g1947 Cec02g1974 Cco02g2013 Clacu02g1928 Cmu02g1877 Cre02g2189 . . . . . . . Cme11g01655 . . . . . . . Bma12g00561 . . . . . . . . Cpe05g01023 Bhi10g00921 . . . . . . . . . . . . . . Csa06g01139 Chy11g01053 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008454 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53215 PF13871 Helicase_C_4 1.00E-108 CL0023 Cre TR