Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2211 ATGCAAGATCCAGCGCCATCAAACCCTATCCACACTCCCAATTCCAATCAAATTCCTCCACTCAATGTTGCAGCACCGCCGCCGAAGACTCACAAACCGCCGCCGGTGGCGAATGCGACGGCCTCCTCTTCATCAATGTTTGCCAATGCGAATACTGGCAATACCTCATTTATGCCTAGAGTAGGCTCTCATCATCGGAGAGCTCATTCAGAAGTTAGTTTCCGGTTGCCGGAGGATATGATGGATATATCCGCGTCGGATCCGTTCAATGGCGGTTCGTCCACCGCAAGTCTGGAGGAGATCGGATCGGAAGATGATCTGTTTTCGACCTACATTGATGTGAAGAAGCTTGGAGGTAATGGAGGAGGGAATTTTGTAGATCATAATGGTAATGGCGGAAGTGAAGGTGCTGGTGGTAGTGAAGGGGAGAAGACTTCGAAGCCAAGGCATCGGCATAGTGTTTCGGTGGATGGAACGACGTCGTCGTCGAGTATGTTTGGGGAAATTATGGAAGCGAAGAAAGCTATGCCTCCTGATAAGTTGGCTGAGCTTTGGTCCAGTGATCCCAAACGCGCTAAAAGGATATTGGCAAATCGACAGTCTGCTGCTCGATCAAAAGAGAGGAAGGCAAGATATATACAAGAATTGGAGCGCAAAGTGCAAACCCTTCAAACAGAAGCAACTACTCTATCAGCCCAATTGACTTTGTTCCAGCGAGACACAACGGGTCTCAGTACTGAAAATACAGAGCTTAAGCTTCGGTTACAGGCTATGGAGCAACAAGCCCAATTGCGTGATGCTTTGAACGAAGCATTAAAGAAGGAAGTTGAGAGGCTTAAAATCGCTACCGGGGAAATGATGAGCCCGTCTGAGTCTTTTAACTTAGGAATGCATCACATGGCGTACGCCCCGTCATCTTTCATTCAACTTTCACAGCAACAACCAGGATCTGCTGGCCTTCAAAATATGCAAATGCCACCATATAGCCATTCTCCATCCAATATGACTACTCACCCTCTGCTTCCATCAGAGTCTCATTCTCTCTCTGAGGTTCTGCAGACCGACTCTCTCGGCCGATTGCAGGGTCTCGACATCAGTAGTAAAGGATCGTCGCTTGTGAAATCCGAGGGCCCTTCACTCTCTGCTAGTGAAAGCAGTACAACCTTTTGA 1170 48.21 MQDPAPSNPIHTPNSNQIPPLNVAAPPPKTHKPPPVANATASSSSMFANANTGNTSFMPRVGSHHRRAHSEVSFRLPEDMMDISASDPFNGGSSTASLEEIGSEDDLFSTYIDVKKLGGNGGGNFVDHNGNGGSEGAGGSEGEKTSKPRHRHSVSVDGTTSSSSMFGEIMEAKKAMPPDKLAELWSSDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKIATGEMMSPSESFNLGMHHMAYAPSSFIQLSQQQPGSAGLQNMQMPPYSHSPSNMTTHPLLPSESHSLSEVLQTDSLGRLQGLDISSKGSSLVKSEGPSLSASESSTTF 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35787316 35790517 + CrPI670011_02g022110.1 Cre02g2211 491492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2211 389 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 37 342 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre02g2211 389 MobiDBLite consensus disorder prediction 1 63 - -
Cre02g2211 389 SUPERFAMILY Leucine zipper domain 190 241 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2211 389 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2211 389 Coils Coil 206 233 - -
Cre02g2211 389 MobiDBLite consensus disorder prediction 365 389 - -
Cre02g2211 389 SMART brlzneu 186 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2211 389 MobiDBLite consensus disorder prediction 123 165 - -
Cre02g2211 389 MobiDBLite consensus disorder prediction 1 19 - -
Cre02g2211 389 CDD bZIP_plant_RF2 191 240 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2211 389 MobiDBLite consensus disorder prediction 36 59 - -
Cre02g2211 389 Coils Coil 254 285 - -
Cre02g2211 389 FunFam probable transcription factor PosF21 189 242 - -
Cre02g2211 389 Gene3D - 189 242 - -
Cre02g2211 389 MobiDBLite consensus disorder prediction 20 34 - -
Cre02g2211 389 Pfam bZIP transcription factor 190 238 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2211 389 MobiDBLite consensus disorder prediction 312 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2211 Cre-Chr2:35787316 Cre07g0896 Cre-Chr7:7970892 1.60E-72 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53217 PF00170 bZIP_1 1.30E-08 CL0018 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2211 - - - 0.0