Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2214 ATGTTAAAGAATACTCGAGCTAGGAATCCCAGCAGCAACCTCCGTGATAGCAACTCGGAATTTGGGTATGTTGAGACCGATCCGACATGTCGTTACGGCCGGTTTGACGAAGTCTTGGGAAAAGGGGCCATGAAGACAGTGTACAAAGCCATTGATGAGTTTCTTGGAATAGAGGTGGCGTGGAGTCAGGTGAAACTCAATGAGGTCCTCCGATCGCCCGAGGATTTGCAGCGGCTGTATTCAGAGGTTCATCTACTTAGCACACTTAAGCATGAATCGATCATGCGATTCTACACCTCTTGGATCGACGTTGATCGCAAAACCTTCAACTTCATTACTGAACTGTTTACTTCTGGAACGCTCAGAGAATACGGAAAGAAGTATAGGCGAATCGATATCAGAGCCATTAAGAGCTGGGCATGCCAGATTCTGCAGGGGCTCATTTATTTGCACGAACACGATCCCCCGATAATACACAGAGATCTGAAGTGTGATAATATCTTTGTGAATGGCCATCTTGGGCAAGTCAAGATTGGTGACTTGGGGCTTGCAGCTATACTTCATGGTTCCAGATCTGCCCACAGTGTTATAGGCACACCGGAGTTTATGGCGCCGGAACTATACGAGGAGAATTACAACGAACTAGTTGATGTCTACTCGTTTGGCATGTGTGTTCTAGAGATGCTTACTTCTGAGTACCCATATAGCGAGTGTTCTAATCCTGCACAGATTTACAAGAAAGTCACGTCGGGAAAGCTGCCAGCAGCATTGTACAAGATTCAAGATATGGATGCGCAGAGATTTGTTAAGAAATGCTTGTTACCGGTTTCGATGAGGGCGTCTGCAAAGGAACTCTTGTCCGATCATTTTCTCAAAGTTGATGGAGATAAACCTTCTTCGAAGGAGAGGACTCCAAACCAGAAGCCATTTCTAAATGCCAAAGAGATGGAGAAATTGCACTTGGGTGAAGGTTTAAGCAGGACCAACATGACGATCACGGGGAAGCTGAACCCCGAAGACAATACCCTCTTTCTCAGAGTTCAGATTGCCGATAAAGAAGGCTCTCTTAGGAACATATACTTCCCCTTCGACATAGTTAACGACACAGCATTAGATGTGGCAATGGAGATGGTGAAAGAGTTGGAGATATCTGATTGGGAGCCGTTCGAAATAGCGGACATGATTGAAGGAGAGATATCGGCTCTAGTTCCGAACTGGAATAGAAGTGAGTTATCCAACCATAACCTCAGCTTTAGCTATGCAGAAGAAGATGATAATGCATCTCATCATACTTTCCGCTCAGTCTCCTCGTCGTCCCAAGCAACAACTTTGGGTCTCATCACCTCCCCTAGAACAAACCAAAACATATCAAATGGTTTTAGTTGGTTCCCAGACGATGTGCTTGATGATAGCAGTTCACAGTGCTCATCGGCGTCGGAAAAATATTCCAACTTGAATTACATCAGCAGCGACGAGAACGAGACCAGTATGAGTTCGGTCCAGATAGATCAACATACCAACATCAATAAGATTCACAATTCCTCAAGATTTTGTCCTGTTGAGAACCGGAAGAACAAGGATTTCTTGGGCGGACTTCTATACAAGCAGAGCCAATGTGCGATAGCAGGGTTGTCTCAAGGAGTTGCCTCGAGGGGAAGGGATGGTTGTAAATTAACAAGGAACAGATCACTAGTAGATGTACATAGCCAATTGCTGCATCGTTCGTTGGTGGAGGAGGTGAATAGAAGACGATTATTCAAGACGGTTGGAGCAGTGGAAAGCATCGGATTTCAAGCACCTTGTGAGGTTTCTTCCAGCAAAAGAGGCTCGAGTAGGCAACCGATCGGGAACCGAAGTAGCGATGTAGTGAGAACGAGGAGAAACAGCGATATTAGGTGGCAAGATGTTGGAAGGAGAACATGA 1923 45.5 MLKNTRARNPSSNLRDSNSEFGYVETDPTCRYGRFDEVLGKGAMKTVYKAIDEFLGIEVAWSQVKLNEVLRSPEDLQRLYSEVHLLSTLKHESIMRFYTSWIDVDRKTFNFITELFTSGTLREYGKKYRRIDIRAIKSWACQILQGLIYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSRSAHSVIGTPEFMAPELYEENYNELVDVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPAALYKIQDMDAQRFVKKCLLPVSMRASAKELLSDHFLKVDGDKPSSKERTPNQKPFLNAKEMEKLHLGEGLSRTNMTITGKLNPEDNTLFLRVQIADKEGSLRNIYFPFDIVNDTALDVAMEMVKELEISDWEPFEIADMIEGEISALVPNWNRSELSNHNLSFSYAEEDDNASHHTFRSVSSSSQATTLGLITSPRTNQNISNGFSWFPDDVLDDSSSQCSSASEKYSNLNYISSDENETSMSSVQIDQHTNINKIHNSSRFCPVENRKNKDFLGGLLYKQSQCAIAGLSQGVASRGRDGCKLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQAPCEVSSSKRGSSRQPIGNRSSDVVRTRRNSDIRWQDVGRRT 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35826417 35829699 + CrPI670011_02g022140.1 Cre02g2214 491495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2214 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g2214 640 Gene3D Transferase(Phosphotransferase) domain 1 116 296 - -
Cre02g2214 640 Gene3D Phosphorylase Kinase; domain 1 17 114 - -
Cre02g2214 640 MobiDBLite consensus disorder prediction 603 626 - -
Cre02g2214 640 FunFam probable serine/threonine-protein kinase WNK9 116 296 - -
Cre02g2214 640 MobiDBLite consensus disorder prediction 603 622 - -
Cre02g2214 640 CDD STKc_WNK 31 291 - -
Cre02g2214 640 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 595 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cre02g2214 640 SMART serkin_6 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2214 640 Pfam Protein kinase domain 36 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2214 640 FunFam Probable serine/threonine-protein kinase WNK1 17 114 - -
Cre02g2214 640 ProSiteProfiles Protein kinase domain profile. 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2214 640 MobiDBLite consensus disorder prediction 1 20 - -
Cre02g2214 640 SUPERFAMILY Protein kinase-like (PK-like) 35 292 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2214 Cre-Chr2:35826417 Cre06g1368 Cre-Chr6:7881587 4.20E-134 dispersed
Cre04g0742 Cre-Chr4:25670752 Cre02g2214 Cre-Chr2:35826417 4.60E-159 transposed
Cre11g2082 Cre-Chr11:32599665 Cre02g2214 Cre-Chr2:35826417 2.50E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63894 PF00069 Pkinase 9.90E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2214 K08867 - csv:101203757 1163.67