Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2225 ATGGCATCCCTTCACTCTCTTTTGCTTTGTGTTTTTGTTTTATCACCTGCCCTAAGCCATAGCCATGCACAGCTGACTCCAAACTTTTACAACAATGTCTGCCCCATGGCCCTGCCCACCATTAAATCCGTCGTCTCGAGCGCCATCAAACGTGAGCCTCGAATGGGAGCTTCCCTCTTACGTCTCCATTTCCATGATTGCTTTGTCAATGGGTGTGACGGATCCGTGTTGTTGGATGATACTGCTACTTTCACCGGAGAAAAGACTGCATTTCCTAATGTTAACTCGATTAGAGGATTTGAAGTTGTTGACAAGATTAAGACACAAGTGAATAAAGTTTGCAAAGGAAATGTCGTGTCTTGTGCTGACATTTTAGCAGTTGCTGCTCGTGACTCCGTTGCTATTCTCGGAGGGCCAAACTACAAAGTATTAGTAGGAAGAAGAGACGCAAGAAGAGCGAGTGCAGACGATGCCAATGGAAATCTCCCTCCACCATTTTTCAACTTCACACAACTTCTATCCAACTTCCAATCTCATGGCCTCAACCTCAAGGACCTCGTCGTCTTGTCGGCCGGCCACACTCTCGGGTACGCCCGGTGCACCAATTTTCGAACTAGGATATATAACGGCACCAACATTGACCCGAAATTTGCAGCAGCATTACAAGGTAACTGCCCACAGAGCGGGGGCGATGACAATCTGAGGAGCCTTGACATGACTCCAAATTTCTTTGACAATGCTTACTTCAAGGCTTTGTTGACAAACAAGGGCCTTTTACATTCCGACCAGGAACTGTTCGGTGGCGGCAACGACGATAGCGATGGTTTGGTGAAGTATTATAGCAGATATCTAATTGCCTTTAGAAATGATTTTGGATCTTCCATGATCAAAATGGGGAATATGAACCCACTTACGGGAAGTAATGGAGAAATCAGAGCCAATTGCAGGCTTGTCAATTGA 960 45.83 MASLHSLLLCVFVLSPALSHSHAQLTPNFYNNVCPMALPTIKSVVSSAIKREPRMGASLLRLHFHDCFVNGCDGSVLLDDTATFTGEKTAFPNVNSIRGFEVVDKIKTQVNKVCKGNVVSCADILAVAARDSVAILGGPNYKVLVGRRDARRASADDANGNLPPPFFNFTQLLSNFQSHGLNLKDLVVLSAGHTLGYARCTNFRTRIYNGTNIDPKFAAALQGNCPQSGGDDNLRSLDMTPNFFDNAYFKALLTNKGLLHSDQELFGGGNDDSDGLVKYYSRYLIAFRNDFGSSMIKMGNMNPLTGSNGEIRANCRLVN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35896080 35897407 + CrPI670011_02g022250.1 Cre02g2225 491506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2225 319 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Cre02g2225 319 FunFam Peroxidase 163 298 - -
Cre02g2225 319 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 FunFam Peroxidase 28 168 - -
Cre02g2225 319 SUPERFAMILY Heme-dependent peroxidases 24 319 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 Pfam Peroxidase 42 280 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 Gene3D - 28 316 - -
Cre02g2225 319 CDD secretory_peroxidase 24 318 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre02g2225 319 ProSiteProfiles Plant heme peroxidase family profile. 24 319 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 PANTHER PEROXIDASE 72-RELATED 12 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre02g2225 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Cre02g2225 319 Gene3D Peroxidase, domain 2 163 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2225 Cre-Chr2:35896080 Cre11g1063 Cre-Chr11:8063455 2.50E-95 dispersed
Cre02g2224 Cre-Chr2:35890650 Cre02g2225 Cre-Chr2:35896080 1.70E-168 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2225 K00430 - csv:101204979 555.058