Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre02g2227 | ATGACTAAAGATACTACAGCAGCAGGCGAGCCATTTCTCACTTGCAGCGTGCACCTCCGAATGCCGAAACAGGCCTTTTTGGGGGACGGGGTGGGGGGATTCGAATCAACACGGTTTCACGAAAAAGGCATGTGTATTGATGCAAATGACCATGTGTTTGAAAATATGAACTTGGTATTGCTTGCAGCTGCTTCTTTGAGTAGAATTAGGGGTGAATTTCAAGCTTTTGATTTAGTCCACTTGTATCATTTCTGTTCATTGGAGGATCCTAGTGGCAGCCCAACCTTTGGCCATCGGAGACTGCCGGAGCATGTGGCGGCCGCGATGTCTAAACCGCCATTGCTCCCCCCCTTGTCTCCACCTCTTTACTCTCCTTCTTCCTTCTTCACTATCCCCCCTGGTATCAGCCCCACCCAATTTCTTCACTCCCCTGATCTCCTCCTCAACTCTCCTCATATTCTGCCATCGCCGTCTACCGGAGCAATATCCGCAGGAGATTTGACCGGAACCAGTAACAATTCCGGCCACCATCAACAGAACATCAAACAAGAACACAACAACTTTACTGAATTCTCATTTCCTCGTACTCATCACACCACAAGATCTCCATCATCATCAATGTTTCAACCCTCTTCAACAGTGCAAAGTCAGCGATGGGGTTGTGAAGCCGCCGTGAACGGCGGCTCCGAAGCCGAGCAGCGAGCAGAATGGGAGTTGAGAAAACGAGGAACTGAGGATGGGTTTAATTGGAGAAAATATGGGCAAAAAGTAGTAAAAGGAAGTGAAAATCCGAGAAGCTATTACAAATGTACATACCCAAATTGCCCTGTAAGAAAGCAAGTTGAAAGATCATTGAATGGTCAAATTACTGAAATTGTTTACAAAAGTAAACATAACCATCCTAAACCAGACTTCACAAGAAGGTCATCATCGTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTGTTATCAGAAGCTTTACCTGCAACTATGGCGGCAGAGCCAAAGAATTCAATTGCCTCTGATTCCCTCACCACGCCGGAGAATTCTTCAATCACGATTGGGGATGATGATGATGATTCCCACGAAGCTGATGCAAAAAGATGGAAAAGTGAGAGTGAGAAGGAAATTATGTCTCCAGTAGGAGGGAAAACAGTGAGAGAACAAAGGGTTGTAGTTCAAACAATTAGCAATGTGGATAAATTAGATGATGGATATTGGTGGAGAAAATATGGACAGAAAGTGGTCAAGGGAAATTCAAATCCAAGGAGCTATTACAAGTGCACATATGCAGGATGTGGAGTGAGAAAGCACATAGAGAGAGCATCCCACGATATAAGGGCAGTCATCACTACCTACGAAGGAAAGCACAACCACGAAGTTCCGATAGCCCGTGGCAGCGGCGGCGGTAGACCGATACTTATTAGTAGTGAAGGAAGTAATAATGATGTTGCATCGAACGGCGGTGGCAACCGACGACAGAGTTCAAAGATCTGTAATGGTAATAATGGATTGTGGGAGTTGACAAACATGGTGTGGAGGAGCAAAGAAGAAGTCGTCGATGACATATTGATGGATTGTTATTAG | 1593 | 44.95 | MTKDTTAAGEPFLTCSVHLRMPKQAFLGDGVGGFESTRFHEKGMCIDANDHVFENMNLVLLAAASLSRIRGEFQAFDLVHLYHFCSLEDPSGSPTFGHRRLPEHVAAAMSKPPLLPPLSPPLYSPSSFFTIPPGISPTQFLHSPDLLLNSPHILPSPSTGAISAGDLTGTSNNSGHHQQNIKQEHNNFTEFSFPRTHHTTRSPSSSMFQPSSTVQSQRWGCEAAVNGGSEAEQRAEWELRKRGTEDGFNWRKYGQKVVKGSENPRSYYKCTYPNCPVRKQVERSLNGQITEIVYKSKHNHPKPDFTRRSSSSFSSSSSSSSSSLLSEALPATMAAEPKNSIASDSLTTPENSSITIGDDDDDSHEADAKRWKSESEKEIMSPVGGKTVREQRVVVQTISNVDKLDDGYWWRKYGQKVVKGNSNPRSYYKCTYAGCGVRKHIERASHDIRAVITTYEGKHNHEVPIARGSGGGRPILISSEGSNNDVASNGGGNRRQSSKICNGNNGLWELTNMVWRSKEEVVDDILMDCY | 530 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 35905384 | 35914198 | + | CrPI670011_02g022270.1 | Cre02g2227 | 491508 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre02g2227 | 530 | Gene3D | WRKY domain | 389 | 465 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre02g2227 | 530 | Gene3D | WRKY domain | 231 | 304 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre02g2227 | 530 | FunFam | WRKY transcription factor | 232 | 304 | - | - | |
| Cre02g2227 | 530 | MobiDBLite | consensus disorder prediction | 293 | 324 | - | - | |
| Cre02g2227 | 530 | MobiDBLite | consensus disorder prediction | 337 | 385 | - | - | |
| Cre02g2227 | 530 | SMART | WRKY_cls | 244 | 302 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre02g2227 | 530 | SMART | WRKY_cls | 404 | 463 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre02g2227 | 530 | MobiDBLite | consensus disorder prediction | 463 | 498 | - | - | |
| Cre02g2227 | 530 | ProSiteProfiles | WRKY domain profile. | 245 | 303 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre02g2227 | 530 | Pfam | WRKY DNA -binding domain | 405 | 462 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre02g2227 | 530 | Pfam | WRKY DNA -binding domain | 245 | 301 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre02g2227 | 530 | MobiDBLite | consensus disorder prediction | 476 | 498 | - | - | |
| Cre02g2227 | 530 | SUPERFAMILY | WRKY DNA-binding domain | 396 | 464 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre02g2227 | 530 | MobiDBLite | consensus disorder prediction | 357 | 379 | - | - | |
| Cre02g2227 | 530 | MobiDBLite | consensus disorder prediction | 158 | 180 | - | - | |
| Cre02g2227 | 530 | SUPERFAMILY | WRKY DNA-binding domain | 244 | 303 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre02g2227 | 530 | ProSiteProfiles | WRKY domain profile. | 399 | 464 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cre02g2227 | 530 | MobiDBLite | consensus disorder prediction | 306 | 324 | - | - | |
| Cre02g2227 | 530 | FunFam | WRKY transcription factor 57 | 390 | 464 | - | - | |
| Cre02g2227 | 530 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 176 | 471 | IPR044810 | GO:0003700(InterPro) | |
| Cre02g2227 | 530 | MobiDBLite | consensus disorder prediction | 338 | 354 | - | - | |
| Cre02g2227 | 530 | MobiDBLite | consensus disorder prediction | 193 | 213 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre02g2227 | Cre-Chr2:35905384 | Cre11g0945 | Cre-Chr11:6767412 | 3.30E-60 | dispersed | |
| Cre03g0335 | Cre-Chr3:1785502 | Cre02g2227 | Cre-Chr2:35905384 | 1.70E-78 | transposed | |
| Cre10g2352 | Cre-Chr10:37666503 | Cre02g2227 | Cre-Chr2:35905384 | 1.90E-78 | transposed | |
| Cre02g2227 | Cre-Chr2:35905384 | Cre05g2563 | Cre-Chr5:36872689 | 9.70E-60 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 53219 | PF03106 | WRKY | 1.90E-22 | CL0274 | Cre | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre02g2227 | K13424 | - | mdm:103447297 | 368.622 |