Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2240 ATGGGAGCCGGTTCATCTCCTTGCGCCTCTTGCAAATTGCTACGGCGGCGCTGCGCAAAAGACTGCATTTTTGCGCCTTATTTCCCTTCCGATGACCCTTTCAAATTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAATGTCAGCAAAATGTTGCAGGAAGTTCCAGTAGAACAGAGAGCAGATGCAGTGAGCAGTATGGTATATGAAGCGAGTGCAAGAATGCGGGATCCAGTGTATGGTTGTGTAGGGACAATCTCGTTTCTACAAAATGAAGTGTCCCGATTGGAAATGCAACTCGGGGCAGCACAAGCAGAAATTTTAACTTTGCATATGCAGCAACAAGCAACTCCAACAACATTTCCGACGACTACGACCCACACGGATCAAGATGATCAAAATCTTGTTATTTTCTCAAATGCTGATTCTTCTAATTCCTTCCGTATTTTCCAGGAAGAGGGGGACTATTACCCTCTATGGACTTGA 486 45.68 MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQRADAVSSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQATPTTFPTTTTHTDQDDQNLVIFSNADSSNSFRIFQEEGDYYPLWT 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36019568 36020363 + CrPI670011_02g022400.1 Cre02g2240 491521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2240 161 Coils Coil 86 106 - -
Cre02g2240 161 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Cre02g2240 161 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 126 - -
Cre02g2240 161 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2240 Cre-Chr2:36019568 Cre09g1636 Cre-Chr9:33675716 8.00E-42 dispersed
Cre02g2240 Cre-Chr2:36019568 Cre07g0805 Cre-Chr7:6832827 1.40E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53220 PF03195 LOB 2.10E-40 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2240 - - - 0.0