Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2259 ATGATGTGCAATGGTTGCAATAGGAAATCTGCAAGCCCTAACTTCGTGATGGACGACAGATTTAGACGAGGGGGATTGGGATTTTGTATCTCTGTTTTGCTTGAATTTTCAGCTACAGATGATCTGATTGGATTTAGGAGTGCTGTTGAGGAAGATGGTTATAATATTGATGAGGCAAGCTTGTGGTATGGGAGGATTTTCGGTTCAAAAAAGATGGGGTATGAAGAAAGGACTCCTCTTATGGTTGCAGCCATGTTTGGGAGTATGAATGTTCTGTCTTATATCCTTCACAGTGGTCGTGTTGATGTTAATCGAGCTTGTGGTTCAGATGGCGCAACGACTCTCCATTGTGCTGTTGCTGGTGGTTCTGCTGTTGCGGATCAGGTTGTCAAACTCTTGATTGATGCTTCCGCTGATGTGAGTGCTGTTGATGCAAACGGTAACCGGCCTGGTGATTTGATTGCTCCTGATTTTACTTCAGCCTCCTATTCAAGGAAAAAAGTGTTACAACAATTACTAAATGGTCGTGAAGAAGCCCTTGGTTCATCCGAGTCAATATTTTACGAGAGAGAAACACAGGAGCCATTGGAGCTATCACCCCCTCGGGCTTCAAGAGATGGGACAGAGAAGAAAGAGTATCCGGTTGATCTCTCACTTCCAGACATCAAGAACGGAATCTATAGCACAGATGAGTTTAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCTCATGATTGGACAGAGTGTCCATTTGTTCACCCTGGGGAAAATGCAAGGAGGCGGGATCCTAGGAAATACCATTACAGCTGCGTCCCATGTCCAGAATTCAGAAAAGGAACATGTAGGCAGGGGGATGCCTGTGAATATGCTCATGGAATTTTTGAATGTTGGCTCCATCCTGCTCAATATCGTACCCGTCTTTGCAAAGATGAAACTGGATGCACCCGAAAAGTCTGTTTCTTTGCTCACAAGCCGGAAGAACTCCGCCCCTTGTATGCTTCAACTGGTTCTGCTGTACTGTCTCCAAGATCGATCTGTGGTTCTTCACTCGACATTGCGTCGATCAGCCCACTTACCCTTGGTTCTCCTTCAGCTCTGATACCTCCTTCATCAACTCCACCTTTAACCCCTTCTGGAGTTTCCTCTCCAATGGGTGGAACCATGTGGCAGACTCAATGTAATATGGCGCCCCCGACCTTGCAGCTTCCAGGTAGCAGGCTAAAGGCTTCTTTGAGCGCAAGAGACATAGATATAGATGTTGAGTTACTCGGTCTCGAAAGTCAGCGCCGTAGACAACAACAGCTAATGGATGAGATGTCCTGTCTACCTTCCCCTACCAGATGGAACAATGGCTTGCCAACCCCTCCATCTTTTCCATCCCCGAGGAGTAGAAATGGAGAACTTAATGGACTTGGAGGCATGAACCCTAATAACCTCGAGGACCTTTTCGGGTCTGTAGATCCTGCGATTTTGCCTCAATTACAAGGACTTTCATTGGATTCTGTGGGATCTCAGGTACAATCCCCTTCTGGGATTCAGATGCGCCAAAACTTGAATCAGTCTTTCCTCTCGAGCTATGCTAACAGCATTGGATCTCCTCCTGCAAGATCATCTCAACCATCCGTGTCTACTGCAGCTAGCGTTCTGAGTTCTAGGGCTGCTGCTTTCGCCAAGCGTAGCCAGAGCTTTATCGAGCGTAGCGTAGTGAACCGTCATTCTGGACTTTCACCCCCAGCTACATCCACAACTGCCATGCCTTTGAGCCTGTCTGATTGGGGTTCGCCGGATGGAAAACTAGACTGGGGAATTCGTGGAGAAGAACTCAACAAGTTAAGGAAGTCTGCATCATTTGGGTTCCGAAACAGTTGCACCAGCACTCTTGCCACGTCCACAATGCACGCTGCCACTCTCGAGCCAGACGTGTCATGGGTTCAGTCCCTGGTGAAGGATGGTCCATCCGAAAATGCTGTGCAGCTGACTATGGACGAGCAGCAGCAACAGCAGCTTTGTCATCTCGACAATGGCGATTCAAAGCGAAGGTACATGGAACAGGAGCAGTTAGTTGCTTGA 2082 47.31 MMCNGCNRKSASPNFVMDDRFRRGGLGFCISVLLEFSATDDLIGFRSAVEEDGYNIDEASLWYGRIFGSKKMGYEERTPLMVAAMFGSMNVLSYILHSGRVDVNRACGSDGATTLHCAVAGGSAVADQVVKLLIDASADVSAVDANGNRPGDLIAPDFTSASYSRKKVLQQLLNGREEALGSSESIFYERETQEPLELSPPRASRDGTEKKEYPVDLSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVLSPRSICGSSLDIASISPLTLGSPSALIPPSSTPPLTPSGVSSPMGGTMWQTQCNMAPPTLQLPGSRLKASLSARDIDIDVELLGLESQRRRQQQLMDEMSCLPSPTRWNNGLPTPPSFPSPRSRNGELNGLGGMNPNNLEDLFGSVDPAILPQLQGLSLDSVGSQVQSPSGIQMRQNLNQSFLSSYANSIGSPPARSSQPSVSTAASVLSSRAAAFAKRSQSFIERSVVNRHSGLSPPATSTTAMPLSLSDWGSPDGKLDWGIRGEELNKLRKSASFGFRNSCTSTLATSTMHAATLEPDVSWVQSLVKDGPSENAVQLTMDEQQQQQLCHLDNGDSKRRYMEQEQLVA 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36180932 36183013 - CrPI670011_02g022590.1 Cre02g2259 491540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2259 693 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515(InterPro)
Cre02g2259 693 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Cre02g2259 693 Pfam Ankyrin repeats (3 copies) 75 143 IPR002110 GO:0005515(InterPro)
Cre02g2259 693 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Cre02g2259 693 PANTHER UNKEMPT FAMILY MEMBER 72 654 IPR045234 -
Cre02g2259 693 Gene3D - 272 334 - -
Cre02g2259 693 SMART ANK_2a 75 105 IPR002110 GO:0005515(InterPro)
Cre02g2259 693 SMART ANK_2a 110 142 IPR002110 GO:0005515(InterPro)
Cre02g2259 693 SUPERFAMILY Ankyrin repeat 72 150 IPR036770 -
Cre02g2259 693 SMART c3hfinal6 271 297 IPR000571 GO:0046872(InterPro)
Cre02g2259 693 SMART c3hfinal6 306 329 IPR000571 GO:0046872(InterPro)
Cre02g2259 693 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872(InterPro)
Cre02g2259 693 Gene3D - 53 176 IPR036770 -
Cre02g2259 693 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 296 IPR000571 GO:0046872(InterPro)
Cre02g2259 693 MobiDBLite consensus disorder prediction 191 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2259 Cre-Chr2:36180932 Cre10g1828 Cre-Chr10:32838409 1.70E-136 dispersed
Cre10g1386 Cre-Chr10:27549866 Cre02g2259 Cre-Chr2:36180932 5.60E-132 transposed
Cre02g2259 Cre-Chr2:36180932 Cre07g0777 Cre-Chr7:6353613 9.30E-212 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53224 PF12796 Ank_2 2.10E-06 CL0465 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2259 - - - 0.0