Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2314 ATGGCCACTATCATTTCTCTCTGCATTGCTTCTCTTCTCTCATTTTCCCTCCTTGTCCAAGCCAGAATCCCCGGAGTTTACTCCGGCGGCCCATGGCAGAGCGCCCACGCCACTTTCTATGGTGGCGCCGACGCTTCCGGCACCATGGGTGGAGCTTGTGGGTACGGCAATTTGTACAGCCAAGGTTATGGCGTGAACACGGCGGCCCTGAGTACCGCATTGTTCAATAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGCGCTAATGACCCTAGATGGTGCCATTCTGGTAGTCCCTCCATCTTGGTTACTGCTACTAATTTCTGCCCGCCCAACTATGCTCTTCCTAACGATAATGGAGGCTGGTGTAACCCTCCCCGGACTCACTTCGATCTTGCCATGCCTATGTTCCTTAAAATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCTCTTACCGCCGTGTACCATGCCGGAAGCAAGGAGGAATCAGGTTCACGATCAACGGGTTCCGTTACTTCAATTTGGTTCTAATCACCAACGTGGCAGGTGCAGGGGATATCGTGAGGGTTAGCGTCAAAGGAACAAGAACCGGGTGGATGAGCTTAACAAGAAACTGGGGGCAAAATTGGCAATCCAATGCCGTCTTAGTGGGCCAGGCTCTTTCTTTTAGAGTTACCGGCAGTGACCGACGAACCTCAACGTCATGGAACATAGTCCCCGCTCATTGGCAGTTCGGCCAAACTTTCACCGGCAAGAACTTCCGTGTTTAA 777 52.77 MATIISLCIASLLSFSLLVQARIPGVYSGGPWQSAHATFYGGADASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILVTATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSLTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36638863 36640674 + CrPI670011_02g023140.1 Cre02g2314 491595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2314 258 CDD DPBB_EXPA_N 31 159 - -
Cre02g2314 258 Gene3D - 164 256 IPR036749 -
Cre02g2314 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Cre02g2314 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Cre02g2314 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Cre02g2314 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Cre02g2314 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Cre02g2314 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Cre02g2314 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Cre02g2314 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Cre02g2314 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Cre02g2314 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Cre02g2314 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cre02g2314 258 Gene3D - 20 160 IPR036908 -
Cre02g2314 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Cre02g2314 258 FunFam Expansin 21 160 - -
Cre02g2314 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Cre02g2314 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Cre02g2314 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Cre02g2314 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Cre02g2314 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Cre02g2314 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Cre02g2314 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Cre02g2314 258 PANTHER EXPANSIN-A15 13 256 IPR002963 GO:0009664(InterPro)
Cre02g2314 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Cre02g2314 258 FunFam Expansin 164 256 - -
Cre02g2314 258 SMART dpbb_1 67 154 IPR007112 -
Cre02g2314 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2314 Cre-Chr2:36638863 Cre05g2585 Cre-Chr5:37029535 7.70E-103 dispersed
Cre01g0497 Cre-Chr1:4275432 Cre02g2314 Cre-Chr2:36638863 4.60E-115 wgd
Cre02g2314 Cre-Chr2:36638863 Cre03g0457 Cre-Chr3:3010152 2.10E-137 wgd
Cre02g2314 Cre-Chr2:36638863 Cre04g0909 Cre-Chr4:27752284 9.60E-138 wgd
Cre02g2314 Cre-Chr2:36638863 Cre07g0690 Cre-Chr7:4766594 2.60E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2314 - - - 0.0