Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2324 ATGGTTGGAATGGGGCAAAAGGATGCGTATGTTGGGGATGAAGCTCAGTCGAAACGTGGTATATTAACACTGAAATATCCCATTGAACATGGTATAGTGAGCAATTGGGACGATATGGAGAAAATTTGGCATCATACCTTTTACAATGAACTCCGAGTGGCTCCTGAAGAGCACCCTGTCCTTCTCACTGAAGCACCTCTGAACCCTAAGGCAAACCGTGAAAAAATGACCCAAATCATGTTCGAAACCTTCAACACTCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCCCTCTATGCTAGTGGACGCACAACTGGTATTGTCTTAGATTCTGGAGACGGTGTTAGTCACACTGTCCCAATTTACGAGGGGTATGCTCTTCCCCACGCCATACTCCGTCTTGACCTTGCTGGCCGTGACCTCACTGATGCCCTTATGAAAATCTTGACTGAACGTGGGTATTCCTTCACCACCACAGCTGAGCGTGAAATTGTGAGGGACATGAAGGAAAAACTAGCATATATTGCCCTTGACTTTGAGCAAGAACTTGAAACTTCCAAGACTGGTTCATCTGTTGAGAAGAGTTACGAACTGCCTGATGGGCAGGTAATCACAATTGGTGCAGAACGTTTTCGATGTCCTGAAGTTCTTTTCCAGCCTTCAATGATTGGAATGGAAGCTGCAGGCATTCATGAAACAACATATAACTCCATCATGAAATGTGATGTTGATATCAGGAAAGATCTGTATGGAAATATTGTTCTTAGTGGTGGATCAACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAAGAAATAACTGCATTAGCCCCTAGCAGCATGAAAATAAAGGTGGTAGCCCCACCCGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTTTGGCCTCCCTCAGCACGTTTCAGCAGATGTGGATCGCAAAGGCAGAGTATGATGAGTCTGGTCCATCCATTGTGCACAGGAAATGCTTCTGA 999 45.15 MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDFEQELETSKTGSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36726534 36728143 - CrPI670011_02g023240.1 Cre02g2324 491605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2324 332 FunFam Putative actin-related protein 5 296 324 - -
Cre02g2324 332 CDD NBD_sugar-kinase_HSP70_actin 31 138 - -
Cre02g2324 332 Gene3D Actin; Chain A, domain 4 137 228 - -
Cre02g2324 332 FunFam Actin, muscle 137 228 - -
Cre02g2324 332 SUPERFAMILY Actin-like ATPase domain 104 332 IPR043129 -
Cre02g2324 332 PANTHER ACTIN 6 324 IPR004000 GO:0005737(PANTHER)
Cre02g2324 332 FunFam Actin, alpha skeletal muscle 1 139 - -
Cre02g2324 332 Pfam Actin 7 332 IPR004000 -
Cre02g2324 332 ProSitePatterns Actins and actin-related proteins signature. 61 73 IPR020902 -
Cre02g2324 332 ProSitePatterns Actins signature 1. 10 20 IPR004001 -
Cre02g2324 332 SMART actin_3 1 332 IPR004000 -
Cre02g2324 332 SUPERFAMILY Actin-like ATPase domain 1 110 IPR043129 -
Cre02g2324 332 ProSitePatterns Actins signature 2. 313 321 IPR004001 -
Cre02g2324 332 Gene3D - 2 326 - -
Cre02g2324 332 PRINTS Actin signature 97 116 IPR004000 -
Cre02g2324 332 PRINTS Actin signature 6 17 IPR004000 -
Cre02g2324 332 PRINTS Actin signature 18 40 IPR004000 -
Cre02g2324 332 PRINTS Actin signature 72 85 IPR004000 -
Cre02g2324 332 PRINTS Actin signature 193 209 IPR004000 -
Cre02g2324 332 FunFam Major actin 214 295 - -
Cre02g2324 332 Gene3D - 95 295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2324 Cre-Chr2:36726534 Cre10g1871 Cre-Chr10:33285010 2.10E-190 dispersed
Cre01g0489 Cre-Chr1:4215697 Cre02g2324 Cre-Chr2:36726534 6.60E-188 wgd
Cre02g2324 Cre-Chr2:36726534 Cre04g0915 Cre-Chr4:27828040 8.10E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2324 K10355 - mdm:103424317 662.144