Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2329 ATGGAGGAGGATAACAATGGCGGCTCCTTTCGGAGTTTGATTGACTTGGTGAACGATGTAGCTTCAATCTCAGACTACAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCAAGACGACTGAAGCTGTTGATCCCATTGTTTGAGGAGATGAGGGATATGAAGCAGCCGCTGCCGGGTCATACCGTGAAAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACCAAGGAGTTGCTTAAACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACGAGGTGACAGCAAGACTAGAGCAAGCTCTGAATGACATTTCACATGAAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAGAGGAAGGAATGATACACAAGATGCCGAGCTGTATGTCAACCTCAACTCTCTCTATAACAACAGCAGAGACTCTGTTGATCCTTCTGTCTTGAAAGGACTGGCTGAGAAGTTGCAGCTGATTGATATAGCTGATCTTACTCAAGAGTCTCTTGATTTACATGAAATGGTTTTGGCTAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATATTATTGAAGAAAATAAAAGATCTTATGCTAACTGAAAACCCTGAAATTGGTCTTTCTTCAAAAGAACAAAGTCATCCTCGCACTGGTGGAAAAGTGTCTGCTGGTAAGAAAGATATAGCGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTCATTGTCTCCACAGGACAGACCTATGAACGTGCTTTCATTGAGAAGTGGCTGGCAGATGGACACTCAACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGTGAGGTCAATGGAATTGAACCACCACAACGTTCCGGCAGTTCTCAGCCCAGTGAGTCGATGACTCTGGCCGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAGACGAGCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGATCTCCTTTCAACAACAGACCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGCATCATGTCCTGTAGGGCAGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTACTCAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTTTTCAACTTGTGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATACTGATGCAGCTGTTGACGGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATATTAGCCATACTGGCTAGCAATTCTGAAGGGCGAGCTGCGATTGGAGCAGCCAAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAACAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTGGAAGCGAAGGAGCTCGGAGTGATTGGTTTGCTTATGGATTTGGCAGAAAATGGCACAGACCGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAGTCTCAGTCTCAAACACAACTGTTATTGCCACAACCTTCCGCAATTGGCAACGTCGAAAGCTGA 1980 45.15 MEEDNNGGSFRSLIDLVNDVASISDYRYAVRKQYCNLARRLKLLIPLFEEMRDMKQPLPGHTVKALASLKEALESTKELLKHGSEGSKIYLALEREQILNQFHEVTARLEQALNDISHEDLDISDEVKEQVELVLSQFKRARGRNDTQDAELYVNLNSLYNNSRDSVDPSVLKGLAEKLQLIDIADLTQESLDLHEMVLASDGDPGGRFEKMSILLKKIKDLMLTENPEIGLSSKEQSHPRTGGKVSAGKKDIASLHIPEDFRCPISLDLMKDPVIVSTGQTYERAFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRSGSSQPSESMTLAERSKYEALLHKLTSGNIEDRRAAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAKSVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLMDLAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQTQLLLPQPSAIGNVES 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36774721 36778360 + CrPI670011_02g023290.1 Cre02g2329 491610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2329 659 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre02g2329 659 CDD MLKL_NTD 31 139 - -
Cre02g2329 659 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre02g2329 659 SMART arm_5 423 463 IPR000225 GO:0005515(InterPro)
Cre02g2329 659 SMART arm_5 505 545 IPR000225 GO:0005515(InterPro)
Cre02g2329 659 SMART arm_5 464 504 IPR000225 GO:0005515(InterPro)
Cre02g2329 659 SMART arm_5 546 586 IPR000225 GO:0005515(InterPro)
Cre02g2329 659 SMART arm_5 382 422 IPR000225 GO:0005515(InterPro)
Cre02g2329 659 SUPERFAMILY ARM repeat 354 626 IPR016024 -
Cre02g2329 659 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre02g2329 659 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515(InterPro)
Cre02g2329 659 Pfam Armadillo/beta-catenin-like repeat 546 585 IPR000225 GO:0005515(InterPro)
Cre02g2329 659 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515(InterPro)
Cre02g2329 659 Coils Coil 95 115 - -
Cre02g2329 659 SUPERFAMILY RING/U-box 252 332 - -
Cre02g2329 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 431 IPR000225 GO:0005515(InterPro)
Cre02g2329 659 Pfam Mixed lineage kinase domain-like N-terminal domain 29 151 IPR054000 -
Cre02g2329 659 PANTHER U BOX DOMAIN-CONTAINING 30 627 - -
Cre02g2329 659 Gene3D - 529 648 IPR011989 -
Cre02g2329 659 Gene3D - 337 528 IPR011989 -
Cre02g2329 659 MobiDBLite consensus disorder prediction 640 659 - -
Cre02g2329 659 FunFam RING-type E3 ubiquitin transferase 257 331 - -
Cre02g2329 659 FunFam RING-type E3 ubiquitin transferase 337 632 - -
Cre02g2329 659 CDD RING-Ubox_PUB 259 311 IPR045210 -
Cre02g2329 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 331 IPR013083 -
Cre02g2329 659 Gene3D - 9 119 IPR036537 GO:0007166(InterPro)
Cre02g2329 659 FunFam RING-type E3 ubiquitin transferase 7 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1342 Cre-Chr2:19492889 Cre02g2329 Cre-Chr2:36774721 3.00E-87 dispersed
Cre02g2329 Cre-Chr2:36774721 Cre07g1008 Cre-Chr7:12813482 7.50E-62 dispersed
Cre04g1763 Cre-Chr4:35622220 Cre02g2329 Cre-Chr2:36774721 2.40E-14 transposed
Cre05g2297 Cre-Chr5:34538688 Cre02g2329 Cre-Chr2:36774721 3.30E-123 transposed
Cre07g0573 Cre-Chr7:3503448 Cre02g2329 Cre-Chr2:36774721 1.30E-36 transposed
Cre07g1210 Cre-Chr7:25372065 Cre02g2329 Cre-Chr2:36774721 1.80E-24 transposed
Cre09g1916 Cre-Chr9:37892964 Cre02g2329 Cre-Chr2:36774721 3.00E-50 transposed
Cre02g2329 Cre-Chr2:36774721 Cre03g0473 Cre-Chr3:3130810 4.90E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2329 K27628 - csv:101221150 1139.02