Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2330 ATGGCTCACTCTTCTCTTCCAATCTTCTTAGATCCTCCAAATTGGCATCAACCGAATCAGCCAGCAGCTGCAGCAACAAATGATGTTCATCAAGACCCACGTCAGCTTCCGGCAGCATTTCTACAACCGCCGCCGCCGCCAACGGCAGGTCATGGAGGAGGCGGAATCCGGCCGGGTTCTATGGCGTATAGAGCCCGGCTGGCGATGATTCCCCAGCCGGAGGCAGCACTAAAATGCCCTCGTTGTGATTCTACAAACACCAAATTTTGCTATTTCAACAATTACAGCCTTTCTCAGCCGCGCCACTTCTGTAAAGCCTGCCGCCGGTACTGGACCCGCGGCGGCGCTCTTAGAAACGTCCCCGTCGGTGGTGGCTTTCGCAAGAACAAGAAGAAGAAGAAATCTAACCCATCTAAGTCCCCCACTGCCTCTCAGTCTCAAATGGGTAATTCAAGATCAATAATGTCAAGAAGCTGCAACAACATGGAGAGCAATAGTACAATGAGGGATTTCCCATCACATTCTTCTTTGCCTTCATTAAATATCCTTCCATCTCTTCAACAACATTTTTCTCGTAATTTTGGAAACAACTTCCCCGGAATTCACATCAATAATTCCGCAGTCGCCAGAGAATACGATATCGAATGGCAACAACAACAACAACCATTCATCGTGGCTGGACTAGAATCTCCGACAACTGCGACAACAACCGCCGCAGCATACACACAAATTGAAGTCAACAACAACGGCAACAACAGCAACTTTGTTGCTAACTCATTACAACAAGCAGCTGGTTTAGTACAATACAATAATAATTGTCATCAACAACTGCAAAATCTGACACCCTTTTCCAGAATTCCTATGAAAAATGAAGAACAAAACCAAGAACAAGGAATATTATTATCAAATTTCTTACGACCAAATGATCACAACAGCCAGTTTTGGGGAAGTAATCATCAAAATTCATGGACGGATCATTTGTCAGCTCTCAGTTCTTCTTCAAGCAGCCATCTTTTGTAA 1020 45.1 MAHSSLPIFLDPPNWHQPNQPAAAATNDVHQDPRQLPAAFLQPPPPPTAGHGGGGIRPGSMAYRARLAMIPQPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKKKSNPSKSPTASQSQMGNSRSIMSRSCNNMESNSTMRDFPSHSSLPSLNILPSLQQHFSRNFGNNFPGIHINNSAVAREYDIEWQQQQQPFIVAGLESPTTATTTAAAYTQIEVNNNGNNSNFVANSLQQAAGLVQYNNNCHQQLQNLTPFSRIPMKNEEQNQEQGILLSNFLRPNDHNSQFWGSNHQNSWTDHLSALSSSSSSHLL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36784936 36786691 - CrPI670011_02g023300.1 Cre02g2330 491611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2330 339 MobiDBLite consensus disorder prediction 36 59 - -
Cre02g2330 339 MobiDBLite consensus disorder prediction 138 174 - -
Cre02g2330 339 MobiDBLite consensus disorder prediction 11 30 - -
Cre02g2330 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 71 264 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2330 339 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre02g2330 339 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre02g2330 339 MobiDBLite consensus disorder prediction 121 174 - -
Cre02g2330 339 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2330 Cre-Chr2:36784936 Cre02g2389 Cre-Chr2:37327454 3.30E-29 dispersed
Cre01g0476 Cre-Chr1:4125629 Cre02g2330 Cre-Chr2:36784936 1.70E-39 wgd
Cre10g2214 Cre-Chr10:36623748 Cre02g2330 Cre-Chr2:36784936 1.20E-37 wgd
Cre02g2330 Cre-Chr2:36784936 Cre03g0474 Cre-Chr3:3153121 5.10E-38 wgd
Cre02g2330 Cre-Chr2:36784936 Cre03g0556 Cre-Chr3:4300660 5.60E-29 wgd
Cre02g2330 Cre-Chr2:36784936 Cre04g0923 Cre-Chr4:27900575 2.80E-36 wgd
Cre02g2330 Cre-Chr2:36784936 Cre07g0681 Cre-Chr7:4608318 4.00E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53229 PF02701 zf-Dof 4.80E-33 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2330 - - - 0.0