Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2374 ATGTCTGTCAATTTCACTGCACTTTTAGACTCAATGGAACCGTTGGATAAACCAGCGCCGAAGTCCTCGCCACTCGCGCCATTTCCTCGGGACTCTCGAGGATCCTTAGAGGTTTTCAATCCCTCGGCCACTTACACGTCCCGACCTCGGGCGAACCCAACGTGGCCCAATTGGGTGGAGCCACGTAGCAGTGCGGAGTCGGACTCAGCCAAACTCGTCGCGAAACCGGCGAGTAAAACCGGCGAGGAAATAACGTCATGGATGGCTTTCAAGGACTCAAACCCTTCCCCACAACCCTCATCCCCACTCGCTCAGAAGACAATATCGGCGATTCTCAGCGACAAATCGCCAACCGGGAAAGCGAAATCGGCGGACGAAGTGGGTTCTGCCGTCCTACGTGCTGCGGAGTGGGGATTAGTACTGAAAACCGATACAGAGACTGGGAAGCCACAAGGCGTTGGAGTTCGAACTTCGGGCGGCGATGAACCGAATACGAAACAGGAAAACTCTAGAAGGACTTCGAATAACTCGGTGCGGAGTTCGGGCGACATGTCGGAAGAAGGGGGAAGAGAAAGAGGGATTCCGAGAGTGTCTGAAGATTTGAAAGACGCTCTGTCGACATTTCAACAAACATTTGTTGTGTCCGATGCTACAAAACCTGATTATCCGATTATGTATGCTAGTGCTGGATTTTTCAAGATGACTGGCTATACTTCCAAGGAGGTTATTGGAAGGAACTGTCGATTTTTACAAGGTGCGGATACGGACCCTGAAGATGTGGCTAAGATCCGAGAAGCTTTACAAGCGGGGACGAGTTACTGTGGAAGGTTGTTGAATTACAAGAAAGATGGGACCCCATTTTGGAACCTTCTTACTATTTCACCAATCAAAGATGATGATGGCAAAATTCTTAAATTTATTGGAATGCAAGTGGAGGTGAGCAAACACACGGAGGGATTTAAAGATAAGATGGTCCGTCCCAATGGCTTGCCAGAATCCTTGATTCGTTATGATGCCCGTCAAAAGGAGATGGCTACAAGTTCGGTAACGGAGCTTGTGCAGGCGGTGAAAAGGCCTCGGTCTGTAAGTGACTATAGGCCTCGGGCTCTAAGTGAATCTATGAACCGCCGGTTATTTAGAAAATCAGGCGGTGGCGGCGGCGGTGACAACAACGACGACAGATTTGAAACCACTATGATTAGGCGAAAGTCAGAGAGTGCAGCACCTCCAACTGGTCGGAAATCGCAGGGAGGAAGTAGAAGATCGATGCAGCGTATCAATGAGCTGCCGGAGAAGAAACCCAAAAAGTCTAGCCGTCGTTCATTTATGGGGATTATGAGGAAAAGTCAATCAAATGTTGAAAGCATTGACATTGAAGATGGTTCCGTGGAGGATAATGAGACCGATGACGATGTTCGGCCAGATAGCGTCGACGACAAAGTAAGGCAGAGGGAAATGAGGAAGGGTATTGATTTAGCTACTACCCTTGAACGTATAGAGAAAAACTTTGTGATTACTGATCCTAGATTGCCTGACAATCCCATTATATTTGCATCTGATAGCTTCCTGGAGCTAACCGAGTACAGTAGAGAAGAAATCTTGGGAAGAAATTGTAGATTTCTGCAAGGTCCTGAAACCGATCGAGCAACCGTCAAGAAAATAAGAGATGCAATCGACAATCAAACAGAAGTTACAGTGCAGCTTATTAACTACACAAAAAGCGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGTGAAGTCCAGTATTTTATTGGAGTACAACTCGACGGTAGTCAACATGTGGAACCGCTAAGCAATTGCATACCGGATAATACTGCAAAGGAAGGCGAGAAATTGATAAAAGAAACCGCAGAAAATGTTGATTTGGCAGCCAGAGAACTTCCTGATGCCAATTTGACACCAGAAGATTTATGGGCAAATCACTCTAAGATGGTTCAACCAAAACCTCACAGAAAGGATAGTCCTTCTTGGAAAGCTATCCAGAAGATTTTAGACAGCGGAGAACAGATAGGACTGAAACATTTCAAGCCAGTGAAGCCTTTGGGATCCGGTGATACTGGCAGCGTGCATTTGGTAGAATTGTGTGGGACTGATCATTATTTTGCAATGAAGGCAATGGATAAGGGTGTTATGCTCAACCGCAACAAGGTCCATAGAGCTTGCGCCGAGAGGGAAATACTTGACATGTTGGATCATCCTTTTCTTCCTGCATTATACGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTCTGCTTTTGGATAGACAACCCACAAAGGTCATAAAGGAAGATGCTGTAAGGTTTTATGCTGCTGAAGTTATCGTCGCATTGGAATATCTCCATTGTCAAGGGATAATTTACCGGGATCTAAAGCCTGAGAATGTTCTACTCCAAAGCAACGGACACGTTGCCTTGACGGATTTTGACTTGTCATGTTTGACTTCTTGTAAACCTCAGCTTTTGCTTCCAACAACAAATGAGAAGAAAAAGCAATCAAGAGCTCAACAAGCTCCGATCTTTATGGCCGAACCAATGCGAGCATCGAACTCCTTCGTCGGAACCGAAGAGTACATAGCACCGGAAATCATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTATTCTTCTATATGAAATGCTTTATGGATACACACCCTTTAGAGGGAAGACAAGGCAAAAGACATTTGCCAACATTCTTCATAAGGATCTTAAATTTCCAAGAAGTATATCGGCTAGTCTCAATGCAAAGCAGTTAATCTTTAGGTTATTGCATAGAGATCCCAAAAACCGATTAGGTTCTCGAGAAGGAGCTAGCGAAATCAAACGACATCCTTTCTTCCGAGGCGTCAATTGGGCGCTGGTTCGTTGCATGAATCCTCCCGAGCTCGAAGCGCCTCTTTTCCAGGCGACCGATGCCGAAAAAGATGCTAATAAGGCATCAGATTTTGATCTAAAAGAACTTGAACTCAGTGTTTTCTGA 3069 45.65 MSVNFTALLDSMEPLDKPAPKSSPLAPFPRDSRGSLEVFNPSATYTSRPRANPTWPNWVEPRSSAESDSAKLVAKPASKTGEEITSWMAFKDSNPSPQPSSPLAQKTISAILSDKSPTGKAKSADEVGSAVLRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNTKQENSRRTSNNSVRSSGDMSEEGGRERGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKILKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSSVTELVQAVKRPRSVSDYRPRALSESMNRRLFRKSGGGGGGDNNDDRFETTMIRRKSESAAPPTGRKSQGGSRRSMQRINELPEKKPKKSSRRSFMGIMRKSQSNVESIDIEDGSVEDNETDDDVRPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCIPDNTAKEGEKLIKETAENVDLAARELPDANLTPEDLWANHSKMVQPKPHRKDSPSWKAIQKILDSGEQIGLKHFKPVKPLGSGDTGSVHLVELCGTDHYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVIKEDAVRFYAAEVIVALEYLHCQGIIYRDLKPENVLLQSNGHVALTDFDLSCLTSCKPQLLLPTTNEKKKQSRAQQAPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISASLNAKQLIFRLLHRDPKNRLGSREGASEIKRHPFFRGVNWALVRCMNPPELEAPLFQATDAEKDANKASDFDLKELELSVF 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37143370 37155520 - CrPI670011_02g023740.1 Cre02g2374 491655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2374 1022 FunFam Putative LOV domain-containing protein 211 367 - -
Cre02g2374 1022 Pfam Protein kinase domain 691 976 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2374 1022 FunFam LOV domain-containing protein 688 772 - -
Cre02g2374 1022 ProSiteProfiles PAC domain profile. 562 616 IPR000700 -
Cre02g2374 1022 Gene3D Phosphorylase Kinase; domain 1 688 772 - -
Cre02g2374 1022 SMART serkin_6 689 976 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2374 1022 CDD STKc_phototropin_like 687 995 - -
Cre02g2374 1022 SUPERFAMILY PYP-like sensor domain (PAS domain) 218 310 IPR035965 -
Cre02g2374 1022 SUPERFAMILY PYP-like sensor domain (PAS domain) 504 603 IPR035965 -
Cre02g2374 1022 MobiDBLite consensus disorder prediction 1 109 - -
Cre02g2374 1022 MobiDBLite consensus disorder prediction 37 64 - -
Cre02g2374 1022 MobiDBLite consensus disorder prediction 458 472 - -
Cre02g2374 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre02g2374 1022 ProSiteProfiles PAS repeat profile. 492 561 IPR000014 -
Cre02g2374 1022 Gene3D PAS domain 476 641 - -
Cre02g2374 1022 Gene3D Transferase(Phosphotransferase) domain 1 773 987 - -
Cre02g2374 1022 MobiDBLite consensus disorder prediction 443 457 - -
Cre02g2374 1022 ProSiteProfiles PAC domain profile. 271 325 IPR000700 -
Cre02g2374 1022 CDD PAS 224 313 IPR000014 -
Cre02g2374 1022 SMART pas_2 199 268 IPR000014 -
Cre02g2374 1022 SMART pas_2 490 559 IPR000014 -
Cre02g2374 1022 SMART pac_2 565 607 IPR001610 -
Cre02g2374 1022 SMART pac_2 274 316 IPR001610 -
Cre02g2374 1022 MobiDBLite consensus disorder prediction 87 109 - -
Cre02g2374 1022 MobiDBLite consensus disorder prediction 358 482 - -
Cre02g2374 1022 CDD PAS 503 603 IPR000014 -
Cre02g2374 1022 FunFam Putative LOV domain-containing protein 773 988 - -
Cre02g2374 1022 FunFam LOV domain-containing protein 477 641 - -
Cre02g2374 1022 MobiDBLite consensus disorder prediction 158 183 - -
Cre02g2374 1022 PANTHER FLIPPASE KINASE 1-RELATED 642 998 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre02g2374 1022 MobiDBLite consensus disorder prediction 361 375 - -
Cre02g2374 1022 NCBIfam PAS domain S-box protein 224 316 IPR000014 -
Cre02g2374 1022 NCBIfam PAS domain S-box protein 513 603 IPR000014 -
Cre02g2374 1022 MobiDBLite consensus disorder prediction 409 423 - -
Cre02g2374 1022 Gene3D PAS domain 211 366 - -
Cre02g2374 1022 SUPERFAMILY Protein kinase-like (PK-like) 666 997 IPR011009 -
Cre02g2374 1022 MobiDBLite consensus disorder prediction 143 195 - -
Cre02g2374 1022 Pfam PAS domain 511 603 IPR000014 -
Cre02g2374 1022 Pfam PAS domain 218 314 IPR000014 -
Cre02g2374 1022 ProSiteProfiles PAS repeat profile. 197 268 IPR000014 -
Cre02g2374 1022 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524(InterPro)
Cre02g2374 1022 ProSiteProfiles Protein kinase domain profile. 689 976 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0647 Cre-Chr2:3412628 Cre02g2374 Cre-Chr2:37143370 2.80E-222 dispersed
Cre02g2374 Cre-Chr2:37143370 Cre02g2508 Cre-Chr2:38353164 5.90E-98 dispersed
Cre02g2374 Cre-Chr2:37143370 Cre02g1369 Cre-Chr2:21989427 7.9e-313 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63906 PF00069 Pkinase 9.90E-63 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2374 K20715 - csv:101214662 1872.06