Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2381 ATGTTTGATCTTAATCTCAATGTTGACTCGCCTGATGCCTCTCAGAATGAGAACTCCGTTGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCAAATGGATGAGTCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGACGACTCGTGCTCCACACGCGCCGGTGGTGAGCTCTTCACGTTCAGCTTCGAGATATTGAAGGCTGGAAGCGCGAACGACGTTGTTACGAAGGAGCTTTTTCCAATAGGTGGAGCGCTGAATGCTGACTTCGGGATTCTTCAGGGGCATAACTCCGCCTCTTCTTCGTCAACTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGGTCAGCAGGGGAGGGGAGAGTGGTTCAGCCGGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATCTGGGACTGTGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACATTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTCGATGCTGACATTAATTTCAATCTTAGTGATTATGAGGATGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGTACTGGTTTTTCAAGAGGGAGCTCCAAATATAGAGGGGTTACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTGACCAACTTTGAGCCTAGCACATACGGAGAGAGAATTTCTGAGGGCGGCAGTGAAGGTGGGCGGAACATGCTCGATTTGAATTTAGGGATTTCACCTCCCTCACTTAACAACTGTCCAAAGGATACTGAGGGGCATCTGCGGTTTCAATCTGGTCCTTGTTATGCTAACGACAGGAGCACAATGATGGAAAGCAATGCTGATGCAGCAGTTAGCGATCCACCTTTGAAAGGACCGGTAATGACATCAGAGCATGCTCCCTTATGGAATGGTTTACAAACTAGCTTCTTTCCCTCTGAGGAAATCGTGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAGTCACCCCCAACTGGGGATGGCAAATTCATAGCCAGGTTAATTCCACCCAAGTGCCACTATTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATCCATCCACTGTGCCGTCCGGGCTCGACCGCCCATAACCTCCATTTCACTTCTGCCAAGGCTTCCCTCAACTCCCCTCAGTATCACCACCAGTTGAACCCACAACAGTGA 1476 50.0 MFDLNLNVDSPDASQNENSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFSFEILKAGSANDVVTKELFPIGGALNADFGILQGHNSASSSSTSSRKNWINLAFDRSGSAGEGRVVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYGERISEGGSEGGRNMLDLNLGISPPSLNNCPKDTEGHLRFQSGPCYANDRSTMMESNADAAVSDPPLKGPVMTSEHAPLWNGLQTSFFPSEEIVTEKRLALGSSQGVTPNWGWQIHSQVNSTQVPLFSAAASSGFSFSATHFPAAIHPLCRPGSTAHNLHFTSAKASLNSPQYHHQLNPQQ 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37234669 37238550 - CrPI670011_02g023810.1 Cre02g2381 491662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2381 491 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2381 491 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2381 491 Pfam AP2 domain 157 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2381 491 Pfam AP2 domain 248 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2381 491 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677(InterPro)
Cre02g2381 491 CDD AP2 157 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2381 491 FunFam AP2-like ethylene-responsive transcription factor 248 308 - -
Cre02g2381 491 MobiDBLite consensus disorder prediction 28 58 - -
Cre02g2381 491 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677(InterPro)
Cre02g2381 491 MobiDBLite consensus disorder prediction 131 158 - -
Cre02g2381 491 CDD AP2 248 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2381 491 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2381 491 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2381 491 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
Cre02g2381 491 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2381 491 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2381 491 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 66 333 - -
Cre02g2381 491 SMART rav1_2 249 312 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2381 491 SMART rav1_2 157 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1541 Cre-Chr2:27750047 Cre02g2381 Cre-Chr2:37234669 1.30E-89 dispersed
Cre02g1701 Cre-Chr2:30101729 Cre02g2381 Cre-Chr2:37234669 5.10E-70 dispersed
Cre02g2381 Cre-Chr2:37234669 Cre04g1320 Cre-Chr4:32003930 6.80E-92 dispersed
Cre10g2174 Cre-Chr10:36291159 Cre02g2381 Cre-Chr2:37234669 2.40E-119 wgd
Cre02g2381 Cre-Chr2:37234669 Cre04g0972 Cre-Chr4:28342347 8.30E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53234 PF00847 AP2 3.10E-09 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2381 K09284 - csv:101222024 912.524