Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2386 ATGGAAGAGTTCTTAGACAATATACCTCCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTCCAGCTTATTATCCCCGTCGAGTCCGCTCATCGAGCCATTTCTTACCTTGGCGAGCTTGGCATCCTTCAATTTAGAGATTTAAACGTGGACAAAAGTCCTTTCCAGAGAACCTTTGTTAACCAGGTAAAGCGATGTGCAGAGATGTCAAGGAAGTTAAGATTTTTCAAAGATCAAATCAGTAAAGCTGGTGTACTGGCATCTACACGCCCAATTCTTCAAGAACATATTGAGCTAGAGGATTTAGAGATACGACTGGCTGATCATGAGCATGAGCTGATTGAAATGAACTCTAACAGCGAGAAACTTCGACAGTCATATAATGAACTATTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGGTGTCCAGTAATAGCCATTCAGTTTCAGAAGGAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAACTATGTTGAGGATGGATCATTACTTGAACAGGAAATGAGACCTGGACCATCCAACCAATCTGGTTTGAGATTTATTTGCGGAATTATTTGTAAATCCAAAGCTCTTAGATTTGAAAGGATGCTGTTTCGTGCAACAAGGGGAAATATGCTTTTCAATCAGGCACCGGCAGATGTACAGATCATGGATCCCATATCTACAGAAATGGTTGAGAAAACAGTATTCGTTGTGTTTTTCTCTGGGGAGCAGGCCAGAAACAAAGTTTTGAAGATCTGTGAGGCTTTTGGAGCAAATTGCTATCCTGTTCCTGAAGATATAACCAAACAAAGGCAGATAACTAGAGAAGTGTCATCTCGCCTCACTGAACTTGAGGCCACTTTAGATGCTGGGATCCGTCACAGAAATGAGGCTCTTGCATCAATAGGGTTTCATTTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGATACGTTGAACATGTTGAATTTTGATGTCACTAAAAAATGTCTTGTTGGAGAAGGGTGGTGCCCAATCTTTGCAAAAACTCAGATTCAGGAGGCACTGCAGCGAGCAACATTTGATAGCAGTTCACAAGTGGGGATAATATTTCATGTAATGGACACGGTTGAATCCCCTCCTACATATTTTAGAACAAACCGTTTGACAAATGCTTTTCAAGAAATTGTTGATGCCTATGGAGTTGTATCAGTGCAAGTATTAGGCTGTTGTATCATCCTCCTTTATGGTCCTTGCAGCATGTATGTGGCTTGTAACCGTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACATTTCCATTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGTTTGTTGCTTGGAGCTTTATTTCTTATAGCTCGTGAAAGTAAGCTCAATAATCAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGCCGCTATGTTCTTCTTTTGATGTCCCTATTTTCAATTTATTGTGGGTTGATCTACAATGAGTTCTTCTCTGTTCCGTATCATATATTTGGCTCCTCTGCTTACAAGTGTCGAGATAATTCATGCAGTGATGCACACACTGTTGGCTTAGTTAAATACCGTGATCCCTATCCATTTGGTGTTGACCCAAGCTGGCGTGGAAGTCGTTCGGAACTTCCTTTTCTGAACTCTCTTAAAATGAAGTTGTCTATCTTGTTGGGTATCGCCCAAATGAACTTAGGGATCATATTGAGTTATTTTAATGCCCGTTTTACTGGAAGCTCACTTGATATCAGGTACCAGTTTGTACCACAAGTGATCTTCCTTAACAGTCTTTTTGGATATCTTTCTCTTCTCATTGTCATCAAGTGGTGCACTGGATCTCAAGCAGACCTCTATCATGTGATGATTTACATGTTTTTAAGCCCATTTGATGATCTTGGCGAGAATGAATTGTTTTGGGGCCAAAGACCTCTTCAAATTATCTTGTTAATGTTGGCTATAGTTGCAGTGCCTTGGATGCTTTTTCCTAAACCCTTTATCTTGAAAAAGATTCACACAGAGAGATTTCAAGGTCGTACTTATGGGATCCTTGGAACCTCTGAGGTAGATCTTGAGGTGGAACCTGATTCAGCAAGGCAACACCAAGACGACTTCAATTTTAGTGAGATCTTTGTTCACCAAATGATTCACTCCATAGAATTTGTCTTGGGTGCAGTTTCAAATACAGCATCGTATCTCCGACTTTGGGCTTTAAGCTTGGCGCACTCAGAACTATCAACAGTTTTCTATGAGAAAGTACTCCTCTTAGCTTGGGGGTATAACAGCTTTGTCATCCGGCTGATTGGTTTAGCTGTTTTTTCGTTTGCCACTGCTTTCATACTTCTTATGATGGAGACCCTTAGTGCCTTCCTTCATGCACTGCGTCTTCATTGGGTTGAGTTTCAAAATAAGTTCTACCATGGTGATGGCCACAAGTTCAAACCTTTTTCCTTTGCCTCCATTGACGAGGACGAAGATTAA 2538 40.46 MEEFLDNIPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFRDLNVDKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGVLASTRPILQEHIELEDLEIRLADHEHELIEMNSNSEKLRQSYNELLEFKMVLQKASVFLVSSNSHSVSEGRELNENVFLNDNYVEDGSLLEQEMRPGPSNQSGLRFICGIICKSKALRFERMLFRATRGNMLFNQAPADVQIMDPISTEMVEKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQITREVSSRLTELEATLDAGIRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQVGIIFHVMDTVESPPTYFRTNRLTNAFQEIVDAYGVVSVQVLGCCIILLYGPCSMYVACNRVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALFLIARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGSSAYKCRDNSCSDAHTVGLVKYRDPYPFGVDPSWRGSRSELPFLNSLKMKLSILLGIAQMNLGIILSYFNARFTGSSLDIRYQFVPQVIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFDDLGENELFWGQRPLQIILLMLAIVAVPWMLFPKPFILKKIHTERFQGRTYGILGTSEVDLEVEPDSARQHQDDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYNSFVIRLIGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGHKFKPFSFASIDEDED 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37283993 37294294 - CrPI670011_02g023860.1 Cre02g2386 491667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2386 845 PIRSF ATP6V0A1 9 415 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Cre02g2386 845 PIRSF ATP6V0A1 426 845 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Cre02g2386 845 Pfam V-type ATPase 116kDa subunit family 431 837 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre02g2386 845 Pfam V-type ATPase 116kDa subunit family 37 406 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre02g2386 845 Coils Coil 93 127 - -
Cre02g2386 845 PANTHER VACUOLAR PROTON ATPASES 430 844 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2386 Cre-Chr2:37283993 Cre08g1408 Cre-Chr8:27059792 5.50E-283 dispersed
Cre02g2386 Cre-Chr2:37283993 Cre02g0838 Cre-Chr2:5167116 1.20E-293 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2386 K02154 - csv:101216514 1599.72