Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g2394 | ATGGAAGGGAGTGATTCTATCGCCACCGTTTCATCAACTCCGCTATCTCAATCTCCTTCTTCTTCTTCTTCTCCGGCACCGCCGCCGCCCGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGACGGCGATGTGCCGAACGATGTGTTTTGGCGCCTTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGAATTAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCTCAGGCTGAGGTTGTGAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAGTCTCATCATCAGTCTTTTGATGATTTCAATGGCAGCCCTCATAATGGCTTATTATTCCAGAGCATCAGCCCAAACTACTTTGATGATAGCAATGTAAACTCATTGTGGGAACCTCTTTGGACATGA | 591 | 48.9 | MEGSDSIATVSSTPLSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPNYFDDSNVNSLWEPLWT | 196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 37371432 | 37372565 | + | CrPI670011_02g023940.1 | Cre02g2394 | 491675 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g2394 | 196 | ProSiteProfiles | LOB domain profile. | 34 | 135 | IPR004883 | - | |
Cre02g2394 | 196 | Pfam | Lateral organ boundaries (LOB) domain | 35 | 132 | IPR004883 | - | |
Cre02g2394 | 196 | Coils | Coil | 114 | 141 | - | - | |
Cre02g2394 | 196 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cre02g2394 | 196 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Cre02g2394 | 196 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 34 | 156 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2394 | Cre-Chr2:37371432 | Cre03g0550 | Cre-Chr3:4254034 | 2.00E-55 | dispersed | |
Cre02g1708 | Cre-Chr2:30223707 | Cre02g2394 | Cre-Chr2:37371432 | 1.10E-50 | transposed | |
Cre02g2394 | Cre-Chr2:37371432 | Cre03g0548 | Cre-Chr3:4224671 | 6.50E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53236 | PF03195 | LOB | 3.80E-41 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g2394 | - | - | - | 0.0 |