Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2394 ATGGAAGGGAGTGATTCTATCGCCACCGTTTCATCAACTCCGCTATCTCAATCTCCTTCTTCTTCTTCTTCTCCGGCACCGCCGCCGCCCGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGACGGCGATGTGCCGAACGATGTGTTTTGGCGCCTTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGAATTAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCTCAGGCTGAGGTTGTGAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAGTCTCATCATCAGTCTTTTGATGATTTCAATGGCAGCCCTCATAATGGCTTATTATTCCAGAGCATCAGCCCAAACTACTTTGATGATAGCAATGTAAACTCATTGTGGGAACCTCTTTGGACATGA 591 48.9 MEGSDSIATVSSTPLSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPNYFDDSNVNSLWEPLWT 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37371432 37372565 + CrPI670011_02g023940.1 Cre02g2394 491675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2394 196 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Cre02g2394 196 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Cre02g2394 196 Coils Coil 114 141 - -
Cre02g2394 196 MobiDBLite consensus disorder prediction 1 20 - -
Cre02g2394 196 MobiDBLite consensus disorder prediction 1 30 - -
Cre02g2394 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2394 Cre-Chr2:37371432 Cre03g0550 Cre-Chr3:4254034 2.00E-55 dispersed
Cre02g1708 Cre-Chr2:30223707 Cre02g2394 Cre-Chr2:37371432 1.10E-50 transposed
Cre02g2394 Cre-Chr2:37371432 Cre03g0548 Cre-Chr3:4224671 6.50E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53236 PF03195 LOB 3.80E-41 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2394 - - - 0.0