Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2404 ATGGGGAAAGAGAAGGTTCACATTAACATTGTGGTCATTGGCCATGTCGACTCAGGGAAGTCAACCACCACCGGACACTTGATCTATAAGCTTGGTGGTATTGACAAGCGTGTCATTGAAAGGTTTGAGAAGGAAGCAGCTGAGATGAACAAGAGGTCCTTCAAGTATGCCTGGGTGTTGGACAAGCTTAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTTGAAACCACCAAATACTACTGCACCGTTATTGATGCCCCTGGACATCGCGATTTCATTAAGAACATGATTACTGGTACCTCACAAGCTGACTGTGCTGTTCTCATTATTGACTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGTCAAACCCGTGAGCATGCTTTGCTTGCGTTTACTCTTGGTGTCAAGCAGATGATTTGCTGCTGCAACAAGATGGATGCCACCACCCCCAAGTACTCCAAGGCAAGGTATGATGAAATTGTCAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGATACAACCCTGACAAAATCCCATTTGTCCCCATCTCTGGTTTCGAAGGAGACAACATGATTGAGAGATCAACCAACCTTGATTGGTACAAGGGTCCAACTCTCCTCGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCCTCAGACAAGCCACTCCGTCTTCCACTTCAGGATGTGTACAAGATCGGTGGTATTGGAACTGTACCAGTCGGACGTGTTGAGACTGGTGTCCTCAAACCTGGAATGGTTGTCACTTTTGGCCCTTCTGGATTGACCACTGAAGTTAAGTCTGTTGAGATGCACCACGAAGCTCTCCCTGAGGCCGTTCCTGGCGACAATGTGGGATTCAACGTGAAGAATGTTGCTGTAAAGGATCTCAAGCGTGGTTTCGTTGCTTCCAACTCAAAGGATGACCCTGCCAAGGAGGCTGCCAACTTCACTTCTCAAGTCATTATCATGAACCACCCAGGACAAATTGGCAATGGTTATGCTCCAGTGCTCGATTGCCACACCTCTCACATTGCCGTGAAGTTTGCCGAGATTCAAACCAAGATCGACAGGCGATCTGGTAAGGAACTTGAGAAGGAACCCAAATTCTTAAAGAATGGTGATGCAGGTATGATTAAGATGGTTCCCACCAAGCCCATGGTGGTGGAAACTTTCTCTCAGTACCCTCCTCTCGGACGTTTTGCCGTGAGGGACATGAGACAGACAGTTGCTGTTGGCGTCATCAAGTCCGTCGAAAAGAAGGATCCAAGTGGTGCTAAGGTTACCAAGTCTGCAGTCAAGAAAGGTGGAAAGTGA 1350 47.56 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALPEAVPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGMIKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAVKKGGK 449
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 37431991 37433442 + CrPI670011_02g024040.1 Cre02g2404 491685
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2404 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Cre02g2404 449 FunFam Elongation factor 1-alpha 229 316 - -
Cre02g2404 449 Gene3D Translation factors 229 316 - -
Cre02g2404 449 CDD EF1_alpha 9 227 - -
Cre02g2404 449 Gene3D Translation factors 323 430 - -
Cre02g2404 449 FunFam Elongation factor 1-alpha 323 430 - -
Cre02g2404 449 FunFam Elongation factor 1-alpha 1 226 - -
Cre02g2404 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Cre02g2404 449 PANTHER TRANSLATION FACTOR 4 427 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Cre02g2404 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Cre02g2404 449 CDD EF1_alpha_II 230 320 - -
Cre02g2404 449 CDD EF1_alpha_III 323 426 - -
Cre02g2404 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Cre02g2404 449 Pfam Elongation factor Tu GTP binding domain 6 221 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g2404 449 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Cre02g2404 449 Gene3D - 1 226 IPR027417 -
Cre02g2404 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g2404 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g2404 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g2404 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g2404 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g2404 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cre02g2404 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525(InterPro)
Cre02g2404 449 Pfam GTP-eEF1A C-terminal domain-like 327 427 IPR054696 -
Cre02g2404 449 NCBIfam translation elongation factor EF-1 subunit alpha 1 433 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0425 Cre-Chr1:3622415 Cre02g2404 Cre-Chr2:37431991 1.50E-255 dispersed
Cre01g0426 Cre-Chr1:3627925 Cre02g2404 Cre-Chr2:37431991 3.40E-255 dispersed
Cre01g1415 Cre-Chr1:27406444 Cre02g2404 Cre-Chr2:37431991 2.50E-75 dispersed
Cre02g2404 Cre-Chr2:37431991 Cre06g1569 Cre-Chr6:10875689 5.40E-229 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2404 K03231 - csv:101213221 895.96