Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2408 ATGCAGAAAGAGTTGTACTCATACTGCTCACTGCTAACTGTTCTGTTGGGAAGCTTAGCAATAGGACACTTGAATGAGGTGGGGAAGAATGCATATTGCTATGGAAATTGTGAAGAGGGTCTTTGCAATTGTTGCTTATCCTCTTCAACTTCTTCTTGTTCCTCAAATTCATCGCCAACGCCCGCCTCTTCTTCAACCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCCAAGAAAGGAAATGTAGTTGTCTATTTCCCACAAGGTCACTTGGAACAAATTGCCTCAGCCTCTCCCTTTTCCCCCATGGAGATGCGCACTTTTGACCTTCAGCCACAGATCCTCTGCAGGGTCATCAATGTCCACCTACTTGCCAATAAGGAGAATGATGAGGTCTATACACAGCTTACTCTCCTTCCCTTGCCAGAGTTAGTAGGCACTGGTCTAGAGGGCAAAGAGCTGGAGGAATTGGCGTTGAATGGGGCTGATGGAGATGGGAGTGGAGGGTCGCCTACTAGATCTACACCTCACATGTTCTGCAAAACACTCACAGCGTCTGACACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCATCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTGGAGTGGAGATTTAAACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTCACTACTGGATGGAGTATTTTTGTAAGCCAAAAGAATCTTATTTCTGGGGATGCAGTGCTGTTTTTAAGGGGTGAGAATGGAGAGTTAAGGTTGGGAATAAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTGTTTCAATTGTTGGCAGCCAAAATCCTTGTGCAAACGATCTTGCTCGTGTGGTGAAAGCAATATCCACCAAGAGCACATTTGATGTGTTTTATAATCCAAGGGCATATCATGCACAATTTGTTATATCTTGTCAGAAGTATGTGAAGAGCATCAATAATCCGGTGACTGTAGGCACAAGATTCAAAATGAGATTTGAGATGGATGATTCGCCAGAAAGAAGGTTTAATGGTGTAGTTGTCGGAATTGGTGACATGGATCCCTTTAGATGGCCGAACTCAAAGTGGAGATGCTTAACGGTCCGATGGGATAAAGACAGTGATCATCAAGAACGTGTTTCCCCCTGGGAGATTGATCCTTCTGTTTCTCTCCCACCCTTGAGCGTTCAGTCGTCTCCAAGACTGAAGAAGCTGAGGACTAGTCTGCAGGCAGCCCCACCTAATAACGCCTTTACTGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTGTTGTATCACCCTTTTATGGATGTGATACTGCGAAACGTTCACTGGAGTTTGATGTGCGATCTTCTGCACAACAAAACCAAGTGTCAGGTGGAGTTGAAAAACTCAATATAGGTGATTATGTAAAGGTTCATGCGAACTCTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAACTAGAAAACCAGAATATAGTTTAGGTGTTTGGGGGAAGTTCAATCTCAGTGACAACTCTTTTAACACATTTCAATCACCAAACTCCAATTTTTATCACATGGCGTCTAATGGTGCCCAAAACATGTATTTCCCTCATAGTGAAATGTACAGTACTGGCCAAGCGGCCATGATGCGCTCAAATGATAGCAACTTTCCAAGAGAGAATGCCTTGTTCAACCCATCTGCTGTTGGTGCTAGTGTTATCAGGACCAAAATGGAAAGGACTAATTGTTCACTTGATCGGGAGTCTCTACATCTAGTGTCTGCTCCTCCAACTTTAGGGTCGAATATGAGGAATTCAAAGGATGAAAATGTGAGTGAGAACCCAACTGGCTGTAAACTTTTTGGCTTTTCATTGACTACGGAAACTGCTACAAACATGCAAAGTTCAGGAAAGAGAAGTTGTACCAAGGTTCACAAACAAGGCAGCCTGGTGGGAAGAGCTATTGATCTCTCTAGGCTGAATGGCTATCCCGATCTGATTTCTGAACTGGAGCGGTTGTTTAGCATGGAAGGTCTCTTAAAAGATCCTGATAAAGGATGGCGAGTGTTGTACACTGACAACGAAAATGACGTAATGGTTGTTGGGGATTATCCATGGCGTGACTTCTGTGACGCGGTTTCCAAAATCCATATATACACTCAAGAAGAAGTGGAAAAGATGACAAATGGAGTGATCAGTGATGATACTCAAAGCTGCTTAGACCAGGCTCCTTTATGTATGGAAGCATCAAAATCCTCTTCAGTGGGCCAACCTGATTCTCCTCCAACAGTCCTCGAAGTCGGTAGCTTTGCTGCCATGAACGGCGTCATATAG 2484 44.69 MQKELYSYCSLLTVLLGSLAIGHLNEVGKNAYCYGNCEEGLCNCCLSSSTSSCSSNSSPTPASSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFDLQPQILCRVINVHLLANKENDEVYTQLTLLPLPELVGTGLEGKELEELALNGADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPVSIVGSQNPCANDLARVVKAISTKSTFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVVGIGDMDPFRWPNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQAAPPNNAFTGRGGFMDFEDSIRSSKVLQGQENVGVVSPFYGCDTAKRSLEFDVRSSAQQNQVSGGVEKLNIGDYVKVHANSSFTGFMESDRFLKVLQGQEICSLRPPTRKPEYSLGVWGKFNLSDNSFNTFQSPNSNFYHMASNGAQNMYFPHSEMYSTGQAAMMRSNDSNFPRENALFNPSAVGASVIRTKMERTNCSLDRESLHLVSAPPTLGSNMRNSKDENVSENPTGCKLFGFSLTTETATNMQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYPDLISELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWRDFCDAVSKIHIYTQEEVEKMTNGVISDDTQSCLDQAPLCMEASKSSSVGQPDSPPTVLEVGSFAAMNGVI 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37450912 37458700 - CrPI670011_02g024080.1 Cre02g2408 491689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2408 827 FunFam Auxin response factor 347 417 - -
Cre02g2408 827 Pfam AUX/IAA family 736 774 IPR033389 -
Cre02g2408 827 MobiDBLite consensus disorder prediction 645 663 - -
Cre02g2408 827 Gene3D - 348 417 - -
Cre02g2408 827 SUPERFAMILY DNA-binding pseudobarrel domain 178 293 IPR015300 -
Cre02g2408 827 CDD B3_DNA 182 284 IPR003340 GO:0003677(InterPro)
Cre02g2408 827 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 66 779 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre02g2408 827 SMART B3_2 184 286 IPR003340 GO:0003677(InterPro)
Cre02g2408 827 Pfam Auxin response factor 311 391 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre02g2408 827 FunFam Auxin response factor 182 286 - -
Cre02g2408 827 ProSiteProfiles PB1 domain profile. 689 773 IPR053793 -
Cre02g2408 827 SUPERFAMILY CAD & PB1 domains 691 768 - -
Cre02g2408 827 Pfam B3 DNA binding domain 184 285 IPR003340 GO:0003677(InterPro)
Cre02g2408 827 Gene3D - 685 778 - -
Cre02g2408 827 MobiDBLite consensus disorder prediction 644 663 - -
Cre02g2408 827 ProSiteProfiles B3 DNA-binding domain profile. 184 286 IPR003340 GO:0003677(InterPro)
Cre02g2408 827 Gene3D - 182 286 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2408 Cre-Chr2:37450912 Cre06g2687 Cre-Chr6:34327108 1.20E-138 dispersed
Cre04g1948 Cre-Chr4:36969652 Cre02g2408 Cre-Chr2:37450912 1.30E-126 transposed
Cre02g2408 Cre-Chr2:37450912 Cre04g0998 Cre-Chr4:28593359 1.70E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53237 PF02309 AUX_IAA 1.50E-07 CL0072 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2408 K14486 - csv:101212503 1482.23