Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2424 ATGGCCATGGCTATAGCTCATCATAGAGAGAGCAGTAGTGGGAGTATAACCAGGCATCTTGATAGTTCTGGGAAGTACGTTCGATACACTGCAGAGCAGGTGGAGGCTCTTGAGCGAGTCTATGCTGAGTGCCCCAAGCCAAGTTCTCTTCGACGCCAGCAGCTTGTTCGGGAGTGCCCAATTCTTTCCAACATAGAACCCAAGCAGATCAAAGTTTGGTTTCAGAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGAAAATTGAATGCTATGAACAAGCTGTTAATGGAGGAGAATGATCGACTGCAGAAGCAAGTGTCGCAATTGGTGTGTGAAAATGGGTTTATGAGGCAGCAATTGCAAACAGTGCCAGCAGCAGCAACTACCGATGCAAGCTGTGATTCTGTGGTCACCACTCCTCAACCCTCTCGACGTGATGCTAATAACCCAGCTGGACTCCTCTCCATTGCAGAGGAGACCTTGACAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCACAAAGTTGTGGTGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGCCTTCGAAGATTGCAGAGATCCTTAAAGATCGTCCATCGTGGTTTCGTGATTGTCGAAGCCTTGAGGTTTTTACCATGTTTCCAGCTGGAAATGGTGGGACAATTGAACTTGTTTACACACAGGTATATGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACGCTAAGATATACAATAACCTTAGAAAACGGCAGCCTTGTGGTTTGCGAGAGATCGCTCTCTGGTTCTGGTGCCGGTCCTAGTGCAGCTGCTGCTGCTCAGTTTGTGAGAGCTGAGATGCTCCCAAGTGGATATCTGATTCGACCATGTGAGGGTGGTGGGTCCATTATACATATTGTTGATCACCTAAATCTTGAGGCATGGAATGTTCCTGAGGTGTTGCGACCACTTTATGAATCATCAAAAGTAGTGGCTCAGAAGATGACAATAGCAGCACTGCGGTATGTTAGGCAAATAGCCCAGGAGACAAGTGGTGAAGTGGTTTATGGTCTTGGCCGGCAACCTGCTGTTTTGCGGACCTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGATTTAATGACAATGGATGGTCGTTGATTAATTGTGAAGGTGCTGAGGATGTGGTACTCACTGTGAATTCTACGAAAAATTTTGGCACAACATCGAACCCTGCTAACTCCTTGACATATCCTGGGGGAGTTCTTTGTGCAAAGGCATCCATGCTACTCCAAAATGTTCCTCCTGCTGTGTTAGTTCGTTTCTTGAGAGAACACCGCTCAGAGTGGGCTGATTTCAACATTGATGCATACTCTGCAGCAACCCTTAAGGCCAATTCATATGCATATCCAGGGATGAGACCCACAAGGTTTACTGGTAGCCAAATCATCATGCCACTCGGTCACACAATCGAGCACGAAGAGTTGCTTGAAGTAATTAGACTTGAAGGACATCCTGTGGTACAAGAAGATGCTTTTGTTTCGAGAGACATTCATCTTCTTCAGATATGTAGTGGAATTGACGAGAATGCTGTAGGGGCCTGTTCAGAACTCATTTTTGCTCCTATTGATGAGATGTTTCCAGACGATGCTCCATTGCTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCCAGAACAAGTGATGCAAAAGGTAGTCAACGGACTCTGGATCTAACATCAAGTCTTGAAGTGGGTTCTGGAACAAGCAATACTGCTGGAGATGCATCATCAAGTCAGAGTGCTAGATCGGTGTTAACCATAGCATTTCAGTTTCCTTTTGAAAGCAGCATGCAGGATAATGTTGCGAACATGGCACACCAGTACGTACGTAGCGTCATTTCCTCAGTGCAGAGAGTTGCGATGGCCATATCTCCATCTGGAGGCAGTCCAGCGCTAGGTCCAAAGCTGTCTCCTGGTTCTCCAGAAGCTCTTACTCTAGCACATTGGATATGCAAGAGCTATAGTTTACAATTGGGAACGGAGTTGATCAAATCAGATTCCTTGGAAAGTGATTCCCTTTTGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCGCTGAAGCAGTCACTGCCTGTTTTTCTGTTTGCAAACCAAGCTGGGCTTGACATGTTGGAGACAACTCTAGTGGCCTTACAAGACATCACGTTGGATAAGATATTTGACGAGTCGGGTCGCAAAGCCTTGTGTGCTGATTTCCCAAAGTTAATGCAGCAGGGATTTGCATACTTGCCGGGAGGAATCTGTGCATCAACAATGGGACGACACGTTTCATACGAACAAGCCGTTGCATGGAAACCTTCTTCAATGGCTGTCCTCGTCCTCATCCATTGGAGCAGGAGCAGGAGGAATGAAGATGAAGATGAAGATGTTTGTTCTTCAATGTCTAATGCAATGCCTCCTTCTCCAAAGTAA 2577 46.37 MAMAIAHHRESSSGSITRHLDSSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLVRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAAATTDASCDSVVTTPQPSRRDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPSKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLTVNSTKNFGTTSNPANSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPVVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRTSDAKGSQRTLDLTSSLEVGSGTSNTAGDASSSQSARSVLTIAFQFPFESSMQDNVANMAHQYVRSVISSVQRVAMAISPSGGSPALGPKLSPGSPEALTLAHWICKSYSLQLGTELIKSDSLESDSLLKNLWNHQDAILCCSLKQSLPVFLFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFPKLMQQGFAYLPGGICASTMGRHVSYEQAVAWKPSSMAVLVLIHWSRSRRNEDEDEDVCSSMSNAMPPSPK 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37600869 37606583 + CrPI670011_02g024240.1 Cre02g2424 491705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2424 858 Gene3D - 201 379 IPR023393 -
Cre02g2424 858 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Cre02g2424 858 Coils Coil 80 121 - -
Cre02g2424 858 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Cre02g2424 858 SUPERFAMILY Homeodomain-like 22 87 IPR009057 -
Cre02g2424 858 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Cre02g2424 858 Pfam MEKHLA domain 697 820 IPR013978 -
Cre02g2424 858 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Cre02g2424 858 SUPERFAMILY Bet v1-like 164 376 - -
Cre02g2424 858 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 19 820 IPR044830 GO:0003700(InterPro)
Cre02g2424 858 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289(InterPro)
Cre02g2424 858 Pfam START domain 165 373 IPR002913 GO:0008289(InterPro)
Cre02g2424 858 CDD bZIP 77 116 - -
Cre02g2424 858 CDD START_ArGLABRA2_like 159 375 - -
Cre02g2424 858 Gene3D - 19 91 - -
Cre02g2424 858 SMART START_1 164 374 IPR002913 GO:0008289(InterPro)
Cre02g2424 858 MobiDBLite consensus disorder prediction 599 629 - -
Cre02g2424 858 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1223 Cre-Chr1:25114660 Cre02g2424 Cre-Chr2:37600869 0.00E+00 dispersed
Cre02g2424 Cre-Chr2:37600869 Cre03g1099 Cre-Chr3:10405006 0.00E+00 dispersed
Cre02g2424 Cre-Chr2:37600869 Cre04g2117 Cre-Chr4:38417369 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53240 PF01852 START 3.40E-46 CL0209 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2424 K09338 - csv:101215773 1584.7