Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2429 ATGAAAGAAGCAGAGAAAAATTTAGATCCCCAACTATGGCATGCCTGTGCAGGAGGCATGGTCCAGATGCCTGCGATTAACTCCAAGGTTTTCTACTTCCCTCAGGGTCACGCCGAGCACGCTCAGGCCACCGTCGATTTCACCTCTTCACTCAGAATCCCGCCGCTTATTCCTTGTCGAGTGCTCGCCGTTAAGTTCTTGGCTGACCATGAAACGGATGAGGTTTTTGCGAATATAAGAATGGTTCCACTGGCGAATAACGACCTCAATTTCGAAGTAGAGGGGGGTTTTGGGAGTAATGGGTCTGAGAATAATATGGAGAAACCGGCTTCTTTTGCCAAGACGTTGACTCAATCCGATGCCAACAACGGCGGTGGATTCTCGGTTCCGAGGTACTGTGCGGAGACGATATTTCCGCGGCTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCCAAGGACGTTCACGGCGAAGTTTGGAAGTTCCGCCATATTTACAGGGGGACGCCTCGCCGGCATTTGTTGACTACTGGGTGGAGTACCTTTGTGAATCAGAAGAAGCTCGTCGCCGGCGACTCGATTGTTTTTCTGAGATCCAAAAATGGCGACCTCTGTGTCGGAATCCGGCGAGCCAAAAGGGCAATTGGGTGTGCCGCCGATCACCCGTACGGATGGAATCCCGGCGGTGGAAATTGCATCCCACCTTATGGTGGATTGACGATGTTTTTAAGAGATGAGGACAACAAGTTGAGTAGAAAAGGGTCTTTGAGTTCCAGTGGTGGTAGTGGGAATTTGAGGGGAAAAGGTAAAGTGAGGCCGGAATCAGTGATGGAAGCGGCGGCGCTTGCGGCGAGTGGACAGCCGTTTGAGGTGGTTTATTACCCACGTGCCAGCACGCCGGAGTTCTGTGTGAAAGCCTCATCGGTTCGAGCCGCCATGAGGATCCAATGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAGACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCTTCTGTTCAAGTTGCTGATCCTATCCGTTGGCCTAATTCTCCATGGCGGCTTCTTCAGGTGACATGGGATGAACCAGATTTGCTACAGAATGTGAAGCGTGTTAGCCCGTGGTTAGTTGAACTGGTATCGAACATGCCCGTCATTCAACTATCACCGTTTTCTCCACCGAGAAAGAAGTTTCGACTACCACAACACCCAGACTTTCCCCTCGACACTCAATTCCCACTGTCGTCATTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTATCGGATTTCCATCTCAACAAACTGCAATTAGGGCTGGTTCCATCCAGTTTTCAGCAGCTTGATTTTCACTCTAGGATTTCCAATAGATCAGTTACAGACCACAGAGACAGCAGCAGTCAGAACTCATCGGCGTTGCTAAACGGGGAAAAGACTGGTCCAAAGTTGGAAAGATCCGATTCGGTGAAGAAGCATCAGTTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCACTTGCAGCTCTTCTGGTGACATTCGTTCACCTCAAACAGACAAAGGCTCCTTGGATGTGAATCTGGAGAGAGTGAAGTTTCTTTCCGATGGCGCAGGATCCACTTTCAAGCAGCAAATTTCTCCAAACAAGTCACCAGGAGTAGGATTTCCATGGTACCAAGGTTATCAAGCCACTGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTTATGGAGTCAGAAGATGTGGGCCGGACACTCAACCTTTCAGTAATCGGCTCATATGAAGAACTATACAGGAGGCTCGCGAATATGTTCGGAATGGAAAAACCAGACATTCTTAGCCATGTACTGTACCAAGATGCAACAGGTGCTGTAAAACAAGCTGGAGATAAACCATTCAGTGATTTCATCAAAACAGCTAGAAGACTGACGATACTAACGGACTCGGGTTCGGACAAGCTGGGAAGGACAATGATGGATGGAATGAGAAGTGGTGAAAATGGATTAGATGCTTCAAACAAGACTGGCCCCTTGAGCATATTTGCCTAG 2145 48.48 MKEAEKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLIPCRVLAVKFLADHETDEVFANIRMVPLANNDLNFEVEGGFGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAADHPYGWNPGGGNCIPPYGGLTMFLRDEDNKLSRKGSLSSSGGSGNLRGKGKVRPESVMEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDTQFPLSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISLSDFHLNKLQLGLVPSSFQQLDFHSRISNRSVTDHRDSSSQNSSALLNGEKTGPKLERSDSVKKHQFLLFGQPILTEQQITCSSSGDIRSPQTDKGSLDVNLERVKFLSDGAGSTFKQQISPNKSPGVGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKLGRTMMDGMRSGENGLDASNKTGPLSIFA 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37637346 37640266 - CrPI670011_02g024290.1 Cre02g2429 491710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2429 714 Gene3D - 319 392 - -
Cre02g2429 714 Gene3D - 602 687 - -
Cre02g2429 714 FunFam Auxin response factor 110 214 - -
Cre02g2429 714 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677(InterPro)
Cre02g2429 714 Pfam Auxin response factor 281 364 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre02g2429 714 SUPERFAMILY DNA-binding pseudobarrel domain 107 216 IPR015300 -
Cre02g2429 714 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 686 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre02g2429 714 FunFam Auxin response factor 319 392 - -
Cre02g2429 714 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677(InterPro)
Cre02g2429 714 SMART B3_2 112 214 IPR003340 GO:0003677(InterPro)
Cre02g2429 714 MobiDBLite consensus disorder prediction 487 515 - -
Cre02g2429 714 MobiDBLite consensus disorder prediction 252 272 - -
Cre02g2429 714 CDD B3_DNA 111 212 IPR003340 GO:0003677(InterPro)
Cre02g2429 714 MobiDBLite consensus disorder prediction 491 506 - -
Cre02g2429 714 Gene3D - 110 214 IPR015300 -
Cre02g2429 714 ProSiteProfiles PB1 domain profile. 602 682 IPR053793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2429 Cre-Chr2:37637346 Cre04g0998 Cre-Chr4:28593359 3.70E-264 dispersed
Cre08g1024 Cre-Chr8:23401708 Cre02g2429 Cre-Chr2:37637346 1.20E-97 transposed
Cre02g2429 Cre-Chr2:37637346 Cre08g0705 Cre-Chr8:20032569 1.50E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53241 PF02362 B3 1.40E-21 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2429 K14486 - csv:101216500 1365.52