Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2437 ATGAAACCCAACACTTGCAATACCAATGGCCACGTCTCCGCCGTGGATGGTCTCTGCTTGAACGATCCATTGTACTGGGGCACCGCCGCCGAGGGGCTCAAAGGAAGCCACCTCGACGAGGTGAAGAAAATGGTGGGGGAGTACCGGCGAGGGGTGGTGCGGCTCGGTGGAGAGAGCTTAACGATTGGGCAGGTGGCGGCGGTGGCGTTGCACGACGGCGGAGTGAAGGTGGAACTGAATGAGGCGGCGAGAGAGGGAGTGAAGGCGAGTAGTGATTGGGTAATGGAGAGTATGAACAAAGGGACGGATAGTTATGGAGTCACCACTGGATTTGGTGCGACCTCCCATCGGAGAACCAATCAAGGAGCTGCTCTGCAGAAGGAGCTTATTCGGTTCTTGAACGCTGGAATATTTGGGAATGGAACAGAGTCTAATCACACGCTGCCTCACACCGCCACAAGAGCAGCCATGTTGGTCAGAATTAACACTCTTCTCCAAGGTTACTCCGGCATTAGATTTGAGATTTTGGAGTCAATTACGAAGCTTCTTAACCACAATGTCACACCTTGCCTTCCCTTACGAGGCACCATTACGGCTTCTGGTGATTTGGTTCCCTTTTCCTATATTGCTGGCTTTCTGACTGGTCGTCCCAATGCCAAGGCTGTCGGCCCAAATGGCAATCTCCTCGATGCTGGAGCAGCTTTTAAACTCGCTGGCATTGATGGTGGATTCTTCGAACTACAACCTAAAGAGGGTCTTGCACTTGTTAATGGGACGGGTGTTGGATCTGGTTTGGCATCTATTGTTTTGTTTGAGGCCAATATATTGGCTCTTTTGTCTGAGGTCATTTCTGCAATTTTTGCTGAAGTAATGCAAGGAAAACCTGAGTTTACTGATCACTTGACTCATAAATTGAAACATCATCCGGGTCAAATCGAGGCAGCAGCCATAATGGAGCATCTTTTGGATGGGAGTGCTTTCATAAAAGATGCTAAGAAGTTACACGAGTTGGATCCTCTTCAAAAGCCGAAACAAGACCGTTATGCTCTTCGGACTTCACCTCAATGGCTAGGCCCTCAAATTGAAGTGATTCGGCATTCGACGAAATCAATTGAGAGAGAGATCAACTCGGTAAATGACAATCCATTGATTGATGTTTCGAGGAATAAAGCTCTACATGGAGGGAATTTTCAAGGAACTCCGATTGGGGTGTCCATGGATAATACTAGATTGGCGCTTGCCTCCATTGGAAAGCTTTTGTTTGCTCAATTCTCTGAACTTGTGAATGATTTCTATAACAATGGATTGCCTTCAAACCTCTCAGGAGGAAGTAATCCAAGCTTGGATTATGGATTTAAAGGAGCTGAAATTGCCATGGCTTCTTATTGTTCAGAACTACAATACCTGGCGAACCCGGTCACCAATCACGTTCAAAGCGCCGAGCAACACAACCAAGATGTGAACTCATTGGGTTTAATCTCTTCCAGAAAAACAGCTGAGGCAATAGATATCTTGAAGCTGATGAGCACAACTTTCCTAGTTGCTCTCTGCCAAGCCATAGATTTGAGACACATAGAGGAGAATCTGAGGAGCACTGTGAAGAACACAGTGAGTCAAGTGGCCAAGAAGGTTTTAACTATTGGAGTTAATGGGGAGCTTCATCCTTCAAGATTCTGTGAGAAAGATTTGCTGAAAGTCATTGATAGAGAATATGTTTTTGCTTACATTGACGATCCTTGCAGCATGACATATCCTTTAATGCAGAAGCTAAGGCAAGTTCTTGTGGAACATGCATTGAACAACAATGACGATTTGAAGAATTCAAACTCCTCAATCTTTCTAAAGATTGGAGCTTTTGAAGAGGAACTAAAAACCCTTTTGCCCAAAGAAGTAGAAAGTGGAAGACAAGCCATTGCAAAAGGCAAACCAACAATTCCCAACAAGATCAAGGATTGCAGATCATACCCACTTTACAGATTTGTTAGAGAAGAATTGGGAACTGCTATCTTGACAGGTGAAAAAGTGAAATCTCCTGGTGAAGAATTTGACAAAGTTTTTACTGCAATTTGTGAGGGGAAAATCATTGATCCTTTGCTTGAATGTCTTGAGAGTTGGAATGGGACTCCTCTTCCTATAAATTAA 2142 44.82 MKPNTCNTNGHVSAVDGLCLNDPLYWGTAAEGLKGSHLDEVKKMVGEYRRGVVRLGGESLTIGQVAAVALHDGGVKVELNEAAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGAALQKELIRFLNAGIFGNGTESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILESITKLLNHNVTPCLPLRGTITASGDLVPFSYIAGFLTGRPNAKAVGPNGNLLDAGAAFKLAGIDGGFFELQPKEGLALVNGTGVGSGLASIVLFEANILALLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHLLDGSAFIKDAKKLHELDPLQKPKQDRYALRTSPQWLGPQIEVIRHSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSGGSNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSTTFLVALCQAIDLRHIEENLRSTVKNTVSQVAKKVLTIGVNGELHPSRFCEKDLLKVIDREYVFAYIDDPCSMTYPLMQKLRQVLVEHALNNNDDLKNSNSSIFLKIGAFEEELKTLLPKEVESGRQAIAKGKPTIPNKIKDCRSYPLYRFVREELGTAILTGEKVKSPGEEFDKVFTAICEGKIIDPLLECLESWNGTPLPIN 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37747868 37752182 + CrPI670011_02g024370.1 Cre02g2437 491718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2437 713 CDD PAL-HAL 58 523 IPR001106 -
Cre02g2437 713 Gene3D Fumarase/aspartase (Central domain) 261 707 - -
Cre02g2437 713 FunFam Phenylalanine ammonia-lyase 14 259 - -
Cre02g2437 713 FunFam Phenylalanine ammonia-lyase 260 558 - -
Cre02g2437 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Cre02g2437 713 SUPERFAMILY L-aspartase-like 22 712 IPR008948 GO:0003824(InterPro)
Cre02g2437 713 Gene3D - 14 259 IPR024083 -
Cre02g2437 713 PANTHER HISTIDINE AMMONIA-LYASE 18 712 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Cre02g2437 713 NCBIfam phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cre02g2437 713 Gene3D - 526 647 IPR023144 -
Cre02g2437 713 Pfam Aromatic amino acid lyase 60 536 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2437 Cre-Chr2:37747868 Cre04g1003 Cre-Chr4:28659291 0.00E+00 dispersed
Cre02g2437 Cre-Chr2:37747868 Cre04g1001 Cre-Chr4:28642727 0.00E+00 wgd
Cre02g2437 Cre-Chr2:37747868 Cre08g0711 Cre-Chr8:20130380 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2437 K10775 - csv:101218156 1357.81