Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2464 ATGTCTTCTCGTCCTTCCGCGTTCGATGCTCTCATGTCTGGTGCTCGGGCCGCTGCCAAGAAAAAGCCTGTTAATTCTTCTCCCAAGAAGCGTAAAGCCCTTGATTCTTTAGACCCTCCTCCGAAACCTAGCTCTTCCCTTGCTCTGGAGTCAACGCCGGCTGTTGAATCGGAGTGCGGCAGTTCAATTGCAAATTTGGACAATCATGGAGGTACTCATCTGGTAAAGTCCGAGGACGCTGCTGATTTGGAGGAAACCAAGTTGCGTCAGGATAATGGTGGCAGTGTTGGACCCAAGAATGGGCCGTTTGCGAACAAGACGTGTGCGTCTAGTGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATTCCAGAGTTGAAAAAGAAGGCCAAGGATTTCAACTCGAAGAATGTTGCATGTTGGAAAGAGGGCGAACGGGTTGCATTTTTGTTTCTGTGTTTGGGTTTCGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACCGATATAGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCTCCAGCACACGAAGGGCTTGAGTTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTCAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCTAAAGCGAGCCGTTCATCTCAGTCTATGATGCGAAAGCCCGATGCTTTAACTATCACCAAAGTATTTGACACATTTCGGCTGATTGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGTGAGCCTTTATATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGACAAGCAGCTGTATATGCTGAAAAACACTCCACTCCACCACCAAATATTCAATCTCCTCTAGAAGAGGCTTCTAAGATTGTAAAGCAGGTGTATTCTATACTCCCAGTTTATGATAAACTTGTCCCTGCTCTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAACATGCAACTTTACACCAGGAATTCCAATTGGACCTATGCTGGCAAAACCAACGAAAGGAGTGTCTGAAATCTTAAATAAATTCCAGGGTATGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATACATTACATGGAAGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGGAACACTGGAAAGTTCCCTGACGTTGTTCTCATGGTAGCAAGGATAAAGAAACCATCTGTAAGATCATTTATTTTGGATTGTGAACTTGTTGCTTACGATCGTGGAAAACAAAAGATTCTGCCTTTTCAGATTCTGAGTACTCGAGCTCGTAAGAATGTGGCCCTGAGTGATATTAAGGTTGAAGTGTGTGTCTTTGCTTTTGATTTACTGTATCTTGATGGCCAACCACTTATCCAGAGAGAACTGAATGTTCGCCGAGAGCTTCTCTACGATTCATTTATTGAAGAACCTGGATATTTTCAATTTGCCACAGCAATAATAACAAATGATCTTGAGGAAATACAAAAGTTCCTTGATGCATCGGTTGATCAAAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGCGATGCTACTTATGAGCCTTCCAAGAGGTCGCTTAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCACTTGATCTGGTACCAATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGTGTCTATGGTGCATTTCTCCTTGCCTGTTATGATAATGACAATGAAGAATTTCAAAGCATTTGTAAGATAGGAACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTTATTCCTGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCTACTGAGGTTTGGGAGGTTAAAGCAGCAGATTTGACTATTAGCCCAGTTCATCGTGCAGGAGTTGGCATTGTGGATTCAGACAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGAAAGACAAAAATCCTGAGGAAGCCTCATCATCTGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACAACCACCAAAACAATCAAGATGACAATGAAGACGACTAA 2289 43.08 MSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLDPPPKPSSSLALESTPAVESECGSSIANLDNHGGTHLVKSEDAADLEETKLRQDNGGSVGPKNGPFANKTCASSVQERTAKLKSSIPELKKKAKDFNSKNVACWKEGERVAFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTITKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPPNIQSPLEEASKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLMVARIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVALSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYDSFIEEPGYFQFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKGISLRFPRLVRVRKDKNPEEASSSEQVADMYNAQKHNHQNNQDDNEDD 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37949643 37959669 - CrPI670011_02g024640.1 Cre02g2464 491745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2464 762 FunFam DNA ligase 390 596 - -
Cre02g2464 762 NCBIfam ATP-dependent DNA ligase 206 745 IPR000977 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro)
Cre02g2464 762 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 120 759 IPR050191 GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER)
Cre02g2464 762 Gene3D - 400 598 - -
Cre02g2464 762 MobiDBLite consensus disorder prediction 737 752 - -
Cre02g2464 762 FunFam DNA ligase 125 392 - -
Cre02g2464 762 Pfam ATP dependent DNA ligase domain 390 594 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cre02g2464 762 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 382 600 - -
Cre02g2464 762 CDD Adenylation_DNA_ligase_I_Euk 379 597 - -
Cre02g2464 762 SUPERFAMILY Nucleic acid-binding proteins 602 748 IPR012340 -
Cre02g2464 762 MobiDBLite consensus disorder prediction 1 73 - -
Cre02g2464 762 ProSiteProfiles ATP-dependent DNA ligase family profile. 496 632 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cre02g2464 762 MobiDBLite consensus disorder prediction 89 108 - -
Cre02g2464 762 FunFam DNA ligase 599 758 - -
Cre02g2464 762 ProSitePatterns ATP-dependent DNA ligase signature 2. 568 594 IPR016059 GO:0003909(InterPro)
Cre02g2464 762 Gene3D DNA ligase/mRNA capping enzyme 419 544 - -
Cre02g2464 762 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 130 381 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cre02g2464 762 Pfam DNA ligase N terminus 149 323 IPR012308 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cre02g2464 762 MobiDBLite consensus disorder prediction 728 762 - -
Cre02g2464 762 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 414 422 IPR016059 GO:0003909(InterPro)
Cre02g2464 762 MobiDBLite consensus disorder prediction 45 68 - -
Cre02g2464 762 CDD OBF_DNA_ligase_I 602 747 - -
Cre02g2464 762 Gene3D - 599 761 IPR012340 -
Cre02g2464 762 Pfam ATP dependent DNA ligase C terminal region 619 730 IPR012309 GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cre02g2464 762 Gene3D - 125 392 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2464 Cre-Chr2:37949643 Cre07g1993 Cre-Chr7:35387256 4.40E-138 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2464 K10747 - csv:101213447 1390.17