Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2467 ATGGAGCAAATTGGGAGGCATTTAATGACGAACATAAGCGATCAATTTGAGCTCCAAGATTTCATCCATGGCGACAACTTGGATCAATATGTGAATCTGATTCGTGGAGGGAACGAAAATTCGATATTCAATAACTTCGATCTTGATTTCATGAACGGTTGCTTGGTGGAGAATCGTTTGGATCCAAGCCCTGAATTCATTGTAGATTCGAATATGTTGATGAATAATTCTGATCCCAATTCTCTGTTTAGTACATTGGAGAGTTTCAATGGCATCATGAAAGAAGTTGAAAATGAAGATGAAGATGAAGATGACACTTCTGTAGAGAATTCTTCTTTCACAACCTCAAAGAAACCTAAGGTCGATCGATCAAGAACTTTGATTTCTGAACGAAGGAGAAGAGGAAGAATGAAGGAAAAGCTTTATGCATTGCGTTCATTGGTTCCAAATATAACCAAGATGGACAAGGCTTCTATTGTTGGGGATGCAGTCTTATATGTGAAAGAGCTACAAATGCAAGCCAAGAAGCTCAAATCAGAGATATCAGTTTTGGAATCTTCAATCAACCAAACACAAATTATTGATAAAGATCAAAACCAAAAGAAGATTATTCAAACTTCACATCCTGACCAATTCCTCCCCATCAAAATAATTCAGCTGGATGTGTTTCAAGTGGAGGAAAGAGGATTTTATTTGAGGTTAGTTTGCAAGATGGGTGAAAGAGTAGCTATGTCTCTTTACAAAGTTCTTGAATCCCTCACCAGCTTCGTTATTCAAAGCTCTAACTTGGCCTCTGCTTCAGATAGATTCATTCTCACCGCTACAATTAATGTGCGAGATTGTGAGGTGGACATGAACTTGCCAAATTTGAAGCTTTGGCTAACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA 918 38.02 MEQIGRHLMTNISDQFELQDFIHGDNLDQYVNLIRGGNENSIFNNFDLDFMNGCLVENRLDPSPEFIVDSNMLMNNSDPNSLFSTLESFNGIMKEVENEDEDEDDTSVENSSFTTSKKPKVDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKSEISVLESSINQTQIIDKDQNQKKIIQTSHPDQFLPIKIIQLDVFQVEERGFYLRLVCKMGERVAMSLYKVLESLTSFVIQSSNLASASDRFILTATINVRDCEVDMNLPNLKLWLTGALLNHGFEF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37983019 37985049 + CrPI670011_02g024670.1 Cre02g2467 491748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2467 305 Coils Coil 167 187 - -
Cre02g2467 305 SMART finulus 127 176 IPR011598 GO:0046983(InterPro)
Cre02g2467 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983(InterPro)
Cre02g2467 305 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 98 303 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cre02g2467 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 189 IPR036638 GO:0046983(InterPro)
Cre02g2467 305 MobiDBLite consensus disorder prediction 97 125 - -
Cre02g2467 305 Gene3D - 119 197 IPR036638 GO:0046983(InterPro)
Cre02g2467 305 Pfam Helix-loop-helix DNA-binding domain 126 171 IPR011598 GO:0046983(InterPro)
Cre02g2467 305 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 117 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2467 Cre-Chr2:37983019 Cre05g2701 Cre-Chr5:37936977 3.80E-16 dispersed
Cre02g2467 Cre-Chr2:37983019 Cre11g1598 Cre-Chr11:26382814 3.40E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53244 PF00010 HLH 2.50E-09 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2467 K26214 - csv:101213681 492.656