Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2510 ATGTCTACTGAACCCGGTCCAACATGGCACCCAAATTTTAGGCAAATCGAGCCCTTCCAAAATGGGCCCCCACTGGGCCCAATTAGCCCCCATGACCCGGCCCAATATTTCCTCCTTCAAAAATCACTCCCTTGCCCCTGCCTCGGCTCCTCAAACGCCTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCTCTCTCCAATGGAGTCATCTCCCGACGACATCGCCGACGACTTACAGAGCCTCAGCTTCAACTCTACCAACACCAACCGCAGCACAAGCTCCGGCTCCGAGACCACTCTCACCGCCTCCTCGTCCTCCTTTAACATCCCTTCCATTCTCAGCAAGCCCCACGCGCCTTCCTCCGACCCTTGCTGGTCCGCTGTTAACCGGATCCGATCCGAATCTTCGTCTCGTCAACTCGTCTTCTCCGACCTTAAGTTCTTCCACCGTCTTGGCTCTGGCGACATTGGCTCCGTCTACCTCTCCGGCCTCAAGTCCGCTGGAACCGACGGATGTTTGTTTGCAGCGAAGGTAATGGATAAGAAGGAACTAGCGAGTAGGAGTAAAGAAGGCAGAGCAAGGACTGAGAGAGAGATTTTGGAGTCTTTGGACCATCCGTTTCTACCGACGCTCTATGCTAGTATCGACTCGCCGAAGTGGCTCTGTCTCTTGACGGAGTTCTGTCCCGGCGGCGACCTCCACGTTCTCCGGCAACGGCAACCTAACAAACGCTTCGATGAACTCGCCGTGAGATTCTATGCATCGGAGATAGTGGTTGCTATCGAGTACCTTCACATGATGGGGATTGTTTACCGTGATCTGAAGCCGGAAAATGTACTGGTACGATCGGACGGCCATATCATGCTCACTGATTTTGATCTCTCCTTGAAGTGTGAGGATTCGACGGCGACCCCACAGGTTATCAATGCTAAATATCTGACAAACGGCACCGCCCCGCTAAAGGACTACCAAATTGATGCCCCTCCTTTCACATCATCCTCCTGCATTCTTCCAAACTGTATAGTCCCGGCCGTGTCATGTTTCAACCCAAAACGCAAGCGCAAGAAGAAGTCTGGTCACCGTAACGGACCCGAGTTTGTCGCTGAACCGGTTGACGTCCGGTCAATGTCATTTGTTGGCACCCACGAGTACTTGGCCCCGGAGATCGTCTCTGGTGAGGGCCATGGAAGCGCGGTGGACTGGTGGACTCTAGGGGTGTTTGTGTTTGAGTTGTTTTATGGAGTGACACCCTTTAGAGGCATGGACAATGAGCTCACCTTGGCCAACATAGTGGCTAGAGCTCTTGAGTTCCCCAAAGAACCAGCGGTGCCAACGGCAGCGAAGGACCTCATCTCTCAGTTATTGATCAAAGACCCGGCGAGACGGTTGGGATCGACGACAGGGTCGTCGGCAATCAAGCACCATTCATTTTTTCAAGGAGTAAATTGGGCATTATTGAGATGTACGTCGCCACCATTTATTCCTCCACCTTTCAGTAGAGAAAAAATTGCATCGGATGAAAGCTGCACAGAGGCTCCAAAGCCGCCTCTTTCCTGTGCTTCCCATGGTACACTGTCATCCGTTCCCTGCCTTGGTGTCATCAGAGATGTACGGAAGGCATACATCTGA 1641 52.41 MSTEPGPTWHPNFRQIEPFQNGPPLGPISPHDPAQYFLLQKSLPCPCLGSSNAFPSSSSSSSSSSSSLSPMESSPDDIADDLQSLSFNSTNTNRSTSSGSETTLTASSSSFNIPSILSKPHAPSSDPCWSAVNRIRSESSSRQLVFSDLKFFHRLGSGDIGSVYLSGLKSAGTDGCLFAAKVMDKKELASRSKEGRARTEREILESLDHPFLPTLYASIDSPKWLCLLTEFCPGGDLHVLRQRQPNKRFDELAVRFYASEIVVAIEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCEDSTATPQVINAKYLTNGTAPLKDYQIDAPPFTSSSCILPNCIVPAVSCFNPKRKRKKKSGHRNGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFELFYGVTPFRGMDNELTLANIVARALEFPKEPAVPTAAKDLISQLLIKDPARRLGSTTGSSAIKHHSFFQGVNWALLRCTSPPFIPPPFSREKIASDESCTEAPKPPLSCASHGTLSSVPCLGVIRDVRKAYI 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38371670 38376595 + CrPI670011_02g025100.1 Cre02g2510 491791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2510 546 Gene3D Transferase(Phosphotransferase) domain 1 236 307 - -
Cre02g2510 546 SMART serkin_6 149 482 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2510 546 Pfam Protein kinase domain 152 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2510 546 Pfam Protein kinase domain 379 482 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2510 546 PANTHER FLIPPASE KINASE 1-RELATED 72 503 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre02g2510 546 Gene3D Phosphorylase Kinase; domain 1 147 235 - -
Cre02g2510 546 FunFam serine/threonine-protein kinase D6PKL2 148 235 - -
Cre02g2510 546 SUPERFAMILY Protein kinase-like (PK-like) 127 510 IPR011009 -
Cre02g2510 546 MobiDBLite consensus disorder prediction 1 33 - -
Cre02g2510 546 MobiDBLite consensus disorder prediction 52 104 - -
Cre02g2510 546 FunFam serine/threonine-protein kinase D6PK-like 377 500 - -
Cre02g2510 546 FunFam serine/threonine-protein kinase D6PK-like 236 303 - -
Cre02g2510 546 Gene3D Transferase(Phosphotransferase) domain 1 378 500 - -
Cre02g2510 546 ProSiteProfiles Protein kinase domain profile. 149 482 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre02g2510 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2510 Cre-Chr2:38371670 Cre05g0071 Cre-Chr5:906286 3.10E-114 dispersed
Cre02g2508 Cre-Chr2:38353164 Cre02g2510 Cre-Chr2:38371670 1.30E-114 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63913 PF00069 Pkinase 1.20E-34 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2510 K08286 - csv:101207262 866.685