Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2521 ATGGAAAAGCTCAAACAAAGGAGAGAACAGACCCCATCAAAGATTAAAAGTTGCAGTCCCCAAAGACAGAACAACAACAACAACAATGGTTTAAAGAAGGATTTTTTTTTAATGGGGAGCCAAAGAGTTGAAGAAACTGGTCCTTCATCCCACTATCATCATCACCTTCCGTATAATTCACTTCTTTATGGAATCAACAACAATAATCTTTCCTCCACTTTGATCAATCACGATGGACAATCTTTTGATTTTGGAGAATTGGAACAAGCAATTGTGCTACAAGGACTCGGACCTAAGAACAAACTCGATCATCACGAACCTAAACAAAGCTTTTTCTCAGGCAAGCCTGCAGCAACTCTGGAAATGTTCCCTTCTTGGCCAATCAAACACCAACAAACTTCAAGAGGAATTAGTTTGAGAAGAAGAGAAGAGAGCAGTGATGAGTCAGGAGCAGCTGTGAACACTCATACAATAAACAAATCTAATAATCAAGAAGGGCATTTGGAGTTGGAAATAGAAAAAGAAGAATCTGAGATGAGTAAAAAGGGTTGTTGTTCATCTTCTTCTTCAGGTCAAGATCAGAGCTTTATTCAAAAGCATCTACAGCAGATTCAACCTGAAATGATACTCAGTGATATTTCAACAACTGCACTTTCATCTCAACATCAATCCCTTCAACAAAAGAGAAAAGGATGTGGTTCCATTTCAACATCACAGAAACAACTTGACGCTAAGACATTGAGACGTTTAGCTCAGAACAGAGAGGCTGCGAGGAAGAGTCGACTAAGGAAAAAGGCTTACGTACAGCAACTCGAGAGCAGTAGAATCAAGCTTACGCAGCTTGAGCAGGACCTTCAACGGGCACGATCTCAGGGTTTGTTTTTAGGTGCCGGCGGTACTGGCGGCGGCATTGTCAGCCCCGCTAGTGCAATTTTCGATATGGAATATGTAAGGTGGTTGGAAGAGGACCATCGACATACAGTCGAGCTGCGTGGGGGACTAGAGGCACATCTCCCTGACATGGATTTGAGAGTGAGAGTAGATGCATGCATTTGCCATTACAATGAAATTTTTCGACTCAAAGGAGAGGCTGCTAAGTCCGACATCTTCCATCTCATCACTGGAATCTGGATGTCTCCGGCGGAGCGTTGTTTCCTCTGGATCGGTGGATTTCGACCCTCCGATCTCATCAAGATGTTAATGTCACAATTGGATCCAATAACAGAACAACAAGTGATGGAGATTTACAAGCTACAACATTCGTCACAACAAGCTGAAGATGCTTTATCTCAAGGACTTGATCAGCTCCATCGGTCTTTGACCGACATCGTCGCCGGCGGTCCGGTCATCGACGGCATCAACCACATGGTTTTGGCCATGGACAAGCTCTCTAGTCTCCAAGGCTTTCTCCATCAGGCAGATATTTTGAGACAACAAACGCTTCATCGACTACGTAGGATACTCACGGTTCGACAAGCGGCCAAATGTTTTCTAATCATTGGTGAATATTACAGTAGATTACGAGCTCTAAGCTCCCTATGGTCCTCTCGTCCAAAGGAGGGGGAAGATAATTCAAGCCAAACAAGCATCTTTGTAAAGGATTTTGGTGTCACCAAGATTCCTTCAAGAACTTCGTATACTGAGGACGTCAACAGCCACAATGCTGAAAATTCTCCGCTAGGCAGCAATAACAAAGGAAAAGAAGACGAGGAGATCAGTAATAGGCAGGCTCCATCCCCCCCATTTGATCTGAATTTGGGTCCTCTTGATACTAATCTTATCAGAGAATTAGAAGAACCTATCTTAGTCAAGGCTAACCCCATTCAATCAAAAAAGGAAAAGATTTCGTCAACAGTTATAGAGGCTGTAGAACCACCTAGACTTAAATCCCCTTGGTCTTAG 1902 43.11 MEKLKQRREQTPSKIKSCSPQRQNNNNNNGLKKDFFLMGSQRVEETGPSSHYHHHLPYNSLLYGINNNNLSSTLINHDGQSFDFGELEQAIVLQGLGPKNKLDHHEPKQSFFSGKPAATLEMFPSWPIKHQQTSRGISLRRREESSDESGAAVNTHTINKSNNQEGHLELEIEKEESEMSKKGCCSSSSSGQDQSFIQKHLQQIQPEMILSDISTTALSSQHQSLQQKRKGCGSISTSQKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARSQGLFLGAGGTGGGIVSPASAIFDMEYVRWLEEDHRHTVELRGGLEAHLPDMDLRVRVDACICHYNEIFRLKGEAAKSDIFHLITGIWMSPAERCFLWIGGFRPSDLIKMLMSQLDPITEQQVMEIYKLQHSSQQAEDALSQGLDQLHRSLTDIVAGGPVIDGINHMVLAMDKLSSLQGFLHQADILRQQTLHRLRRILTVRQAAKCFLIIGEYYSRLRALSSLWSSRPKEGEDNSSQTSIFVKDFGVTKIPSRTSYTEDVNSHNAENSPLGSNNKGKEDEEISNRQAPSPPFDLNLGPLDTNLIRELEEPILVKANPIQSKKEKISSTVIEAVEPPRLKSPWS 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38496260 38507866 + CrPI670011_02g025210.1 Cre02g2521 491802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2521 633 Gene3D - 244 293 - -
Cre02g2521 633 MobiDBLite consensus disorder prediction 131 196 - -
Cre02g2521 633 SUPERFAMILY Leucine zipper domain 245 288 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2521 633 MobiDBLite consensus disorder prediction 1 33 - -
Cre02g2521 633 ProSiteProfiles DOG1 domain profile. 309 517 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cre02g2521 633 MobiDBLite consensus disorder prediction 166 181 - -
Cre02g2521 633 MobiDBLite consensus disorder prediction 150 165 - -
Cre02g2521 633 Pfam bZIP transcription factor 244 286 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2521 633 MobiDBLite consensus disorder prediction 13 33 - -
Cre02g2521 633 FunFam BZIP family transcription factor 244 293 - -
Cre02g2521 633 PANTHER TRANSCRIPTION FACTOR TGA9 185 520 - -
Cre02g2521 633 MobiDBLite consensus disorder prediction 543 562 - -
Cre02g2521 633 MobiDBLite consensus disorder prediction 607 633 - -
Cre02g2521 633 Coils Coil 158 178 - -
Cre02g2521 633 MobiDBLite consensus disorder prediction 182 196 - -
Cre02g2521 633 Pfam Seed dormancy control 328 402 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cre02g2521 633 Coils Coil 264 291 - -
Cre02g2521 633 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 243 287 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2521 633 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 248 263 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2521 633 SMART brlzneu 241 318 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2521 633 MobiDBLite consensus disorder prediction 543 585 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2521 Cre-Chr2:38496260 Cre08g1009 Cre-Chr8:23189625 5.30E-89 dispersed
Cre08g1138 Cre-Chr8:24596346 Cre02g2521 Cre-Chr2:38496260 4.80E-11 transposed
Cre10g2326 Cre-Chr10:37486577 Cre02g2521 Cre-Chr2:38496260 3.20E-15 transposed
Cre11g1250 Cre-Chr11:10870287 Cre02g2521 Cre-Chr2:38496260 1.40E-71 transposed
Cre01g1119 Cre-Chr1:20413933 Cre02g2521 Cre-Chr2:38496260 4.10E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53250 PF14144 DOG1 1.30E-27 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2521 K14431 - csv:101223216 641.343