Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2551 ATGGCGACGTACTTTCACGGTGGTTCAGAAATCCAAGCGAATTCTGACGGAATTCATACTCTTTACCTTATGAACCCAAATTACGTACCTTACTCTGACACCCACTCTCAAACGCCTCCCAATATGCTCTTTCTCAACTCTTCTTCAACTCACGCGCTTAACCCTTCAACTCTTCCTCACGCGCCGCCTTCCAACAACCACTTCGTCGGAATTCCCCTCCCGACCACCGACAATCCTCGTCCATCCTACCACGAAATCTCAACCCTCCATCCGATGCCACCTCACCGCCTCCACTACAATCTATGGGCTCCTATGGACCAACAACCCCATCACGGAATTTCCGGCGATTCCGCCGATTTGACCTTCCGCCGCCCCACCACACAACAAGGTTTATCCTTAAGCCTCTCCTCCCAACAATCGCTTTACCGGACACTCTCGGCCGAGCAGGAGATTCAAGGCGGCGGCGGCGGTGCTCCAAGTGGGGAGGAAATTCGGGTGTCGGGAAATTCACCGACGTCGGTGTCGGTGGTGTCGAGTGGAATAACGGGCGTTCAAAGCGTGATATTGGGGTCTAAGTACTTGAAAGCGGCTCAAGAACTTTTGGATGAAGTGGTTCATGTTGGCAAAGGAAATTTTAAATCCGACAAAGGGGATGGGACAAAGGACAAGATGAAGATGAAGAAAGAATCAACGGCTACGATTGGTGGAGACCCTTCCGCCTCCGTCGGCGGTGGTGAAAGTACTTCCAAGCCTGTTGCTGAGCTCAGCACTGCTCAAAGACAGGACCTTCAGATGAAAAAAGCTAAGCTCATTGGCATGCTTGATGAGGTGGAGCAGAAGTACAGACAATATCATCAACAAATGCAAGGAGTGGTGAGTTGTTTTGAGCAGGCAGCAGGTTTGGGGTCAGCCAAATCTTACGCTTCACTCGCACTTGAAACAATTTCAAAGCAATTCCGGTGCTTAAAAGATGCAATTTGTGCACAAATAAAAGCGACAGGGAAAAGCTTAGGAGAAGAAGAAAATTGGTTGGGTTCAAAAATTGAAGGGTCTTCAAGATTGAGATACGTTGATCATCATTTAAGGCAGCAAAGAGCTTTGCAACAATTGGGAATGATTCAACACAATACTTGGAGACCACAAAGAGGTTTGCCTGAACGAGCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAGCATTTCCTTCATCCCTATCCCAAGGATTCAGACAAGATTATTCTCGCCAAACAAACCGGACTCACAAGAAGCCAAGTATCGAATTGGTTTATAAATGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAAGAAATGTACTTGGAGGAAATCAAAGAGCAAGAACAAAACGGGGATTCCCAAGACATGATTAGAGGAGGAGATCATCATCATCATCATCATCAAAGCAATAACAACAATAATAATAGTAATAATGATCCACAATATTCCAAGACAGAAAATTTGATGAACAACAACAACAACAACCCTTCCCATTCTTCAATCTCATCATCCTCAATGTTAGGAATAGGATCAACGACGGGCGGCTTCAACCTCGTACGACCGTCCTCCGACAATAACATTCTCTCAAGTCCCAAAAAACCAAGGACCACCACCAGTAGCAGTACAGCCACAATCAACAACAACAACCTGCCCGAAACCCCATCCTCAAAATCCATGCTTTTAAGAGACAATATTGTTCATGATCATCATAGGGGTAGTTTTGGTAATTCCAATACATACCCGGTTGGTGAAATTGGCTCAACCTTCAATTCTGAGCTTTTAACACCAAGATTTCATGCAAATGGAGTCTCTCTCACTCTTGCCCTTCCCCATAATAGTAATTCAGATCATCTCTCTCTTTCAGCCAACCAACCAAATTACCATCACCTATCCTCCAACCCAAATCTTCACTTGGGCAGATCAAGGCTTGATATCACCAATAATCATCATCCCGGACCACCCAATTTCTCCGACGTCAATCCCGCTGCCCCCCCACCGCCTCATTCCGCTTACGACCACGTTGAAATGCAAACCACCAAAAGGTTCGCCGCCCAATTGTTGCCGGATTTTGTTGCCTGA 2091 46.25 MATYFHGGSEIQANSDGIHTLYLMNPNYVPYSDTHSQTPPNMLFLNSSSTHALNPSTLPHAPPSNNHFVGIPLPTTDNPRPSYHEISTLHPMPPHRLHYNLWAPMDQQPHHGISGDSADLTFRRPTTQQGLSLSLSSQQSLYRTLSAEQEIQGGGGGAPSGEEIRVSGNSPTSVSVVSSGITGVQSVILGSKYLKAAQELLDEVVHVGKGNFKSDKGDGTKDKMKMKKESTATIGGDPSASVGGGESTSKPVAELSTAQRQDLQMKKAKLIGMLDEVEQKYRQYHQQMQGVVSCFEQAAGLGSAKSYASLALETISKQFRCLKDAICAQIKATGKSLGEEENWLGSKIEGSSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGDSQDMIRGGDHHHHHHQSNNNNNNSNNDPQYSKTENLMNNNNNNPSHSSISSSSMLGIGSTTGGFNLVRPSSDNNILSSPKKPRTTTSSSTATINNNNLPETPSSKSMLLRDNIVHDHHRGSFGNSNTYPVGEIGSTFNSELLTPRFHANGVSLTLALPHNSNSDHLSLSANQPNYHHLSSNPNLHLGRSRLDITNNHHPGPPNFSDVNPAAPPPPHSAYDHVEMQTTKRFAAQLLPDFVA 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38742831 38746291 + CrPI670011_02g025510.1 Cre02g2551 491832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2551 696 Gene3D - 381 459 - -
Cre02g2551 696 FunFam BEL1-like homeodomain protein 9 381 443 - -
Cre02g2551 696 Pfam Associated with HOX 187 326 IPR006563 -
Cre02g2551 696 MobiDBLite consensus disorder prediction 450 472 - -
Cre02g2551 696 MobiDBLite consensus disorder prediction 209 230 - -
Cre02g2551 696 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 138 492 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre02g2551 696 MobiDBLite consensus disorder prediction 209 260 - -
Cre02g2551 696 SUPERFAMILY Homeodomain-like 379 444 IPR009057 -
Cre02g2551 696 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677(InterPro)
Cre02g2551 696 MobiDBLite consensus disorder prediction 234 260 - -
Cre02g2551 696 Coils Coil 260 287 - -
Cre02g2551 696 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre02g2551 696 MobiDBLite consensus disorder prediction 149 172 - -
Cre02g2551 696 MobiDBLite consensus disorder prediction 450 562 - -
Cre02g2551 696 SMART prehox3 182 328 IPR006563 -
Cre02g2551 696 SMART HOX_1 378 442 IPR001356 GO:0003677(InterPro)
Cre02g2551 696 CDD homeodomain 378 439 IPR001356 GO:0003677(InterPro)
Cre02g2551 696 MobiDBLite consensus disorder prediction 474 562 - -
Cre02g2551 696 MobiDBLite consensus disorder prediction 649 668 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2551 Cre-Chr2:38742831 Cre11g0897 Cre-Chr11:6157965 1.70E-80 dispersed
Cre02g1612 Cre-Chr2:28859874 Cre02g2551 Cre-Chr2:38742831 9.80E-70 transposed
Cre04g1254 Cre-Chr4:31285032 Cre02g2551 Cre-Chr2:38742831 7.90E-70 transposed
Cre10g1946 Cre-Chr10:34169119 Cre02g2551 Cre-Chr2:38742831 1.10E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53256 PF07526 POX 2.10E-46 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2551 - - - 0.0