Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2560 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTTGTGACTGTGAGATGTGGCCATTGTTCAAATCTGTTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAATGCTGGGGATTCAAGTAAGGACAGAGCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGAGTTCCTTCGGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAGAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAAATAA 525 42.67 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38856095 38862166 - CrPI670011_02g025600.1 Cre02g2560 491841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2560 174 SUPERFAMILY HMG-box 110 158 IPR036910 -
Cre02g2560 174 Gene3D High mobility group box domain 110 161 IPR036910 -
Cre02g2560 174 PANTHER PROTEIN YABBY 6-RELATED 6 172 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Cre02g2560 174 FunFam axial regulator YABBY 5-like 103 161 - -
Cre02g2560 174 MobiDBLite consensus disorder prediction 58 96 - -
Cre02g2560 174 CDD HMG-box_SF 119 155 - -
Cre02g2560 174 MobiDBLite consensus disorder prediction 58 121 - -
Cre02g2560 174 Pfam YABBY protein 7 165 IPR006780 GO:0007275(InterPro)
Cre02g2560 174 MobiDBLite consensus disorder prediction 97 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2560 Cre-Chr2:38856095 Cre06g1989 Cre-Chr6:27349901 1.20E-46 dispersed
Cre02g2560 Cre-Chr2:38856095 Cre11g0793 Cre-Chr11:5151634 2.10E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53257 PF04690 YABBY 3.50E-75 CL0114 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2560 K25796 - csv:101222154 324.324