Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2560 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTTGTGACTGTGAGATGTGGCCATTGTTCAAATCTGTTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAATGCTGGGGATTCAAGTAAGGACAGAGCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGAGTTCCTTCGGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAGAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAAATAA 525 42.67 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38856095 38862166 - CrPI670011_02g025600.1 Cre02g2560 491841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2560 174 SUPERFAMILY HMG-box 110 158 IPR036910 -
Cre02g2560 174 Gene3D High mobility group box domain 110 161 IPR036910 -
Cre02g2560 174 PANTHER PROTEIN YABBY 6-RELATED 6 172 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Cre02g2560 174 FunFam axial regulator YABBY 5-like 103 161 - -
Cre02g2560 174 MobiDBLite consensus disorder prediction 58 96 - -
Cre02g2560 174 CDD HMG-box_SF 119 155 - -
Cre02g2560 174 MobiDBLite consensus disorder prediction 58 121 - -
Cre02g2560 174 Pfam YABBY protein 7 165 IPR006780 GO:0007275(InterPro)
Cre02g2560 174 MobiDBLite consensus disorder prediction 97 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2560 K25796 - - csv:101222154 324.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2560 Cre-Chr2:38856095 Cre06g1989 Cre-Chr6:27349901 1.20E-46 dispersed
Cre02g2560 Cre-Chr2:38856095 Cre11g0793 Cre-Chr11:5151634 2.10E-48 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g2533 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 2.1e-46 182.6
Cre05g2549 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 2.1e-46 182.6
Cre09g2142 . 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.0 6.3e-42 167.5
Cre02g2560 . 1 174 C2C2-YABBY Transcription Factor Family AT1G08465 65.9 1.2e-54 209.9
Cre09g2142 . 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.3e-43 173.3
Cre06g1989 . 6 180 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 2.4e-42 169.1
Cre11g0793 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 1.3e-40 163.3
Cre10g0542 . 26 194 C2C2-YABBY Transcription Factor Family AT1G08465 52.1 3.3e-39 158.7
Cre09g2142 . 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.9 1.2e-50 196.8
Cre10g0542 . 35 194 C2C2-YABBY Transcription Factor Family AT4G00180 54.3 3.5e-37 152.1
Cre05g2709 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.2 3.6e-39 159.1
Cre06g1989 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 71.0 1.1e-62 236.5
Cre11g0793 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 1.0e-60 229.9
Cre02g2560 . 1 174 C2C2-YABBY Transcription Factor Family AT2G26580 59.2 1.2e-48 189.9
Cre09g2142 . 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.7e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53257 PF04690 YABBY 3.50E-75 CL0114 Cre TF