Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2561 TCCAAGGCACGGAAGTTGCCGGCGATCTTCGACCAAGACGAACCGAAAGGTATATTCGACTTCTTTCAGTCTTCTCACTCACTCCGGAACCTGATTAGTTTCGTTAATCGCTTTCTCTTCCCTGTTACTCGAGTTTCATTCTGTGAGAAACTGCCATGTCGATTCGAACTTCTCCACATTTCCGAAAGCGAGCGGTGGAAATTTCTCTCGCGAGCCCAGTCGAACGGTGAACTTGACAGTGGAGTGGCGTTTCTTGCCTTTTGCACTCCGCCTTGCATTCTACAATGTGGATCAAAGAAAGCCAAACCTGCTCCAAGCAACTTAGAGAAATCCGCTTCAGCTGAACTACAGTCTGGGAAAACAGGGCCGAGTGGTGGAGAAAGTACTGGCAGACGGATAACTAGCAAGTATTTTGCATCAGAAAAGCATAAGGACAAGGATACAAAAGAAACAGAGGAACCCCCGATCAAACAAAAGTCTCCACAGGATCCTAAGGAATCTCCAGCCAAAAGAAAGTTTCAAATGGATAATGAGGGATCGCCAAAAGCTTCACCTTTAAAAAAATCAAACAAAATTGATGACAATGACAATGATGCTGTTTTTTCTAGTTCTAGAAAGAACATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTTTAGAAATTGAAGCGAGCGATGATGAGGAAACTAAGGGCACCGATTCTTCTCTGAAGCCTAGTGGAAGAGGTAGGGGAGGAAGAGGTTCATCTGCTGCAACCGGTGGTGGTAGAGGCAGAGGTGGTGGGCGAGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTCAGACTGCTTAGCCGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCACGGTGGCCGAGTAACTGGATCTGTCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACCGGTTTTCTCACTGAGGATGGCTTATTTGACATGATCCGTGCATCAGGCCAAAAAGCTCCTCCAAGGCAAGATCCTAAAAAATCTGTGGTTAAGTCCTCTGTGGAATCTCCGACAGAGAAAAATTTCCAGAAAGTACAAGCAAAGCCCCGCAAGGATTTGACTGCTAGTGCTTCACCTGCTAAGCAAAAAAGCCGAACAGCTGAATTCTCTAACCTAACATGGACCGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCGCTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACAAAAACTTCCTAGATGTTGGAAGCAAAAAGAAGGTTAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCCGCTAAGTTGGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTAAACGCCAGCGACAATCGAGGTAAATCAGATGCCAAAATTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAACTTATCAGCAATGAATCACTGCACTTCAGAATGGATCAGCCAAAACATCCCAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCAAGCATTAAAATGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAGCTGAAAAGCCTTGTGAACTACTGTCTTATTCTCAGCTTTAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCTATGTCAGTTATTAAATATGATGATATTCGCCAACGGCTTCTGGGCAGTATGAAAGATGAAGACATCTCACCATTCACTGCTGTTGATAAGCTGTTTGGTTTCAATTCTGGGAAGTTAAGGATGGACGAACGGATTGACCTCAGCATGAGTGATCTTGATTTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTACAGGCCAAGCGCTGTTAGTAAGGATGACAATGGGATAAAACGGATGGATTTGATTGCCCGTACAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTGTATTGCTTCTTGTGTAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTGGTGCATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCACGTTCACATTCTTGCTTCTCGCGAATCCTGCTCAGGGAGGGAACACCTAAGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGAGCCACTACACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTGGTCGAATTTATGAGTCTATATTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGTGTAGCCCCCGCAGTGAAAGCTGCTCTGACAAAGGCATACAAAGAAGTAAGCAAGACACACATGGTGCGGGCCGCAGATCTTATTACGCTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCGACTGAGGATGCAGTTGAAGGTGCTGGTGGAGACACATTGGCAGAAAGTGACGACGAAAACTCTTTGGACAATGAGGACGCAGAAGACTCCACAAACGGTGAGAAGCTGCAATTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTGTGGAAAATTCAAGTGCGACGAAATCCGGTGGCAGAGGACGAGGAGGTAGAAGTTCTCAGGCTTCAGAGAAGAAAGGTGGTCGAGGTTCAGAAATGAGACCAAGTCTTCGCCATGGAGCGGTCGACATTTGGGATGATGATTCACCCAACGGACGAGACTGGTTTTTGTAG 3210 43.49 SKARKLPAIFDQDEPKGIFDFFQSSHSLRNLISFVNRFLFPVTRVSFCEKLPCRFELLHISESERWKFLSRAQSNGELDSGVAFLAFCTPPCILQCGSKKAKPAPSNLEKSASAELQSGKTGPSGGESTGRRITSKYFASEKHKDKDTKETEEPPIKQKSPQDPKESPAKRKFQMDNEGSPKASPLKKSNKIDDNDNDAVFSSSRKNMSEVTPNKKLKSGSGKGITQKPLEIEASDDEETKGTDSSLKPSGRGRGGRGSSAATGGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGQKAPPRQDPKKSVVKSSVESPTEKNFQKVQAKPRKDLTASASPAKQKSRTAEFSNLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNKNFLDVGSKKKVKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFRMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDNGIKRMDLIARTAESIADGDIINVQIRRHRQWQLSQSSCIASCVIPASLLHGQRETLEQGERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHTLPKDEAVKMVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVAPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDAVEGAGGDTLAESDDENSLDNEDAEDSTNGEKLQLELQSLNKKGMQVQLDLKGVENSSATKSGGRGRGGRSSQASEKKGGRGSEMRPSLRHGAVDIWDDDSPNGRDWFL 1069
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38880071 38893156 + CrPI670011_02g025610.1 Cre02g2561 491842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2561 1069 FunFam Replication factor C subunit 1 694 803 - -
Cre02g2561 1069 Gene3D BRCT domain 273 375 IPR036420 -
Cre02g2561 1069 SUPERFAMILY post-AAA+ oligomerization domain-like 693 838 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cre02g2561 1069 Gene3D - 694 804 - -
Cre02g2561 1069 FunFam Replication factor C subunit 1 272 375 - -
Cre02g2561 1069 MobiDBLite consensus disorder prediction 955 990 - -
Cre02g2561 1069 SMART AAA_5 485 623 IPR003593 GO:0016887(InterPro)
Cre02g2561 1069 FunFam Replication factor C subunit 1 433 621 - -
Cre02g2561 1069 CDD HLD_clamp_RFC 622 680 IPR047854 -
Cre02g2561 1069 CDD BRCT_RFC1 296 374 - -
Cre02g2561 1069 CDD AAA 474 622 - -
Cre02g2561 1069 Pfam ATPase family associated with various cellular activities (AAA) 489 601 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre02g2561 1069 MobiDBLite consensus disorder prediction 201 221 - -
Cre02g2561 1069 Gene3D - 622 692 - -
Cre02g2561 1069 MobiDBLite consensus disorder prediction 230 245 - -
Cre02g2561 1069 SUPERFAMILY BRCT domain 296 375 IPR036420 -
Cre02g2561 1069 PIRSF RFC1 95 1025 IPR012178 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)
Cre02g2561 1069 MobiDBLite consensus disorder prediction 110 135 - -
Cre02g2561 1069 MobiDBLite consensus disorder prediction 136 177 - -
Cre02g2561 1069 ProSiteProfiles BRCT domain profile. 296 374 IPR001357 -
Cre02g2561 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 682 IPR027417 -
Cre02g2561 1069 MobiDBLite consensus disorder prediction 1051 1069 - -
Cre02g2561 1069 MobiDBLite consensus disorder prediction 99 296 - -
Cre02g2561 1069 MobiDBLite consensus disorder prediction 1010 1069 - -
Cre02g2561 1069 Pfam BRCA1 C Terminus (BRCT) domain 298 373 IPR001357 -
Cre02g2561 1069 MobiDBLite consensus disorder prediction 1031 1045 - -
Cre02g2561 1069 MobiDBLite consensus disorder prediction 280 295 - -
Cre02g2561 1069 SMART BRCT_7 298 376 IPR001357 -
Cre02g2561 1069 MobiDBLite consensus disorder prediction 377 429 - -
Cre02g2561 1069 MobiDBLite consensus disorder prediction 1010 1029 - -
Cre02g2561 1069 MobiDBLite consensus disorder prediction 969 984 - -
Cre02g2561 1069 FunFam Replication factor C subunit 1 622 693 - -
Cre02g2561 1069 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 144 1000 - GO:0003677(PANTHER)|GO:0005634(PANTHER)
Cre02g2561 1069 Pfam Replication factor RFC1 C terminal domain 762 924 IPR013725 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)
Cre02g2561 1069 Gene3D - 433 621 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2561 K10754 - - csv:101204361 1638.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2561 Cre-Chr2:38880071 Cre05g0437 Cre-Chr5:3958725 4.70E-21 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g0009 . 105 876 Core DNA Replication Machinery Family AT4G14700 59.1 3.0e-254 875.2
Cre08g0009 . 105 876 Core DNA Replication Machinery Family AT4G12620 61.2 1.6e-263 906.0
Cre08g1518 . 65 425 Core DNA Replication Machinery Family AT2G37560 65.7 3.0e-142 501.9
Cre07g0857 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.9e-152 535.0
Cre06g1130 . 2 453 Core DNA Replication Machinery Family AT4G29910 60.4 6.1e-153 538.1
Cre11g1348 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.1 4.2e-94 341.7
Cre01g0220 . 61 854 Core DNA Replication Machinery Family AT1G79150 59.6 2.1e-247 852.4
Cre10g1454 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1350.9
Cre04g2057 . 128 702 Core DNA Replication Machinery Family AT5G46280 81.0 8.9e-269 922.9
Cre02g0837 . 99 845 Core DNA Replication Machinery Family AT2G16440 77.2 0.0e+00 1142.5
Cre11g0844 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Cre04g2202 . 7 835 Core DNA Replication Machinery Family AT5G44635 71.2 0.0e+00 1167.9
Cre09g0492 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cre02g2271 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.8e-163 571.2
Cre02g2271 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.1e-143 506.1
Cre09g0839 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.0 1.1e-256 882.9
Cre10g2170 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1094.3
Cre09g1589 . 58 456 Core DNA Replication Machinery Family AT2G14050 85.7 3.5e-197 685.3
Cre09g1588 . 9 238 Core DNA Replication Machinery Family AT2G14050 68.7 2.5e-86 317.0
Cre02g1504 . 1 411 Core DNA Replication Machinery Family AT2G20980 56.4 6.9e-119 424.5
Cre09g0257 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.1e-72 270.0
Cre11g1099 . 1 184 Core DNA Replication Machinery Family AT1G19080 69.0 4.3e-71 264.6
Cre11g1099 . 1 184 Core DNA Replication Machinery Family AT3G55490 69.0 4.3e-71 264.6
Cre05g0223 . 6 155 Core DNA Replication Machinery Family AT5G49010 65.3 2.8e-49 192.2
Cre02g1551 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1769.6
Cre01g1501 . 24 641 Core DNA Replication Machinery Family AT1G67630 59.5 9.8e-205 710.3
Cre06g0976 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.5 2.9e-183 638.6
Cre08g0134 . 211 654 Core DNA Replication Machinery Family AT5G41880 65.5 1.7e-177 619.4
Cre04g1149 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.5 0.0e+00 1788.9
Cre10g1868 . 1 428 Core DNA Replication Machinery Family AT2G42120 74.8 8.5e-195 676.8
Cre06g0976 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.5 2.9e-183 638.6
Cre09g1984 . 1 127 Core DNA Replication Machinery Family AT1G09815 61.5 5.5e-38 154.1
Cre02g2512 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2983.0
Cre01g0417 . 62 2110 Core DNA Replication Machinery Family AT1G08260 67.8 0.0e+00 2775.3
Cre02g2512 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2947.9
Cre01g0417 . 84 2190 Core DNA Replication Machinery Family AT2G27120 65.2 0.0e+00 2722.6
Cre01g1601 . 726 1192 Core DNA Replication Machinery Family AT5G22110 66.2 6.7e-180 627.5
Cre02g2561 . 273 1004 Core DNA Replication Machinery Family AT5G22010 73.4 1.2e-302 1036.2
Cre10g0592 . 3 332 Core DNA Replication Machinery Family AT1G63160 91.5 2.4e-173 605.1
Cre04g0578 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.2e-178 622.9
Cre11g2009 . 19 337 Core DNA Replication Machinery Family AT1G21690 81.6 2.3e-144 508.8
Cre08g0540 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 1.9e-155 545.8
Cre11g0650 . 26 604 Core DNA Replication Machinery Family AT2G06510 68.1 4.8e-244 840.9
Cre10g0366 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.3 4.1e-195 678.3
Cre06g2422 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.1 7.0e-248 853.6
Cre10g0366 . 10 812 Core DNA Replication Machinery Family AT5G45400 50.7 9.6e-227 783.9
Cre06g2422 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 3.3e-240 828.2
Cre10g0366 . 5 798 Core DNA Replication Machinery Family AT4G19130 53.7 3.7e-225 778.5
Cre03g2054 . 1 376 Core DNA Replication Machinery Family AT5G26680 85.7 6.4e-184 640.6
Cre05g0360 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.5 8.0e-300 1026.9
Cre07g1923 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 1.4e-115 412.9
Cre02g2464 . 2 762 Core DNA Replication Machinery Family AT1G08130 69.1 1.4e-296 1015.8
Cre02g2464 . 162 762 Core DNA Replication Machinery Family AT1G49250 69.1 2.1e-242 835.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009501 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33