Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre02g2561 | TCCAAGGCACGGAAGTTGCCGGCGATCTTCGACCAAGACGAACCGAAAGGTATATTCGACTTCTTTCAGTCTTCTCACTCACTCCGGAACCTGATTAGTTTCGTTAATCGCTTTCTCTTCCCTGTTACTCGAGTTTCATTCTGTGAGAAACTGCCATGTCGATTCGAACTTCTCCACATTTCCGAAAGCGAGCGGTGGAAATTTCTCTCGCGAGCCCAGTCGAACGGTGAACTTGACAGTGGAGTGGCGTTTCTTGCCTTTTGCACTCCGCCTTGCATTCTACAATGTGGATCAAAGAAAGCCAAACCTGCTCCAAGCAACTTAGAGAAATCCGCTTCAGCTGAACTACAGTCTGGGAAAACAGGGCCGAGTGGTGGAGAAAGTACTGGCAGACGGATAACTAGCAAGTATTTTGCATCAGAAAAGCATAAGGACAAGGATACAAAAGAAACAGAGGAACCCCCGATCAAACAAAAGTCTCCACAGGATCCTAAGGAATCTCCAGCCAAAAGAAAGTTTCAAATGGATAATGAGGGATCGCCAAAAGCTTCACCTTTAAAAAAATCAAACAAAATTGATGACAATGACAATGATGCTGTTTTTTCTAGTTCTAGAAAGAACATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTTTAGAAATTGAAGCGAGCGATGATGAGGAAACTAAGGGCACCGATTCTTCTCTGAAGCCTAGTGGAAGAGGTAGGGGAGGAAGAGGTTCATCTGCTGCAACCGGTGGTGGTAGAGGCAGAGGTGGTGGGCGAGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTCAGACTGCTTAGCCGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCACGGTGGCCGAGTAACTGGATCTGTCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACCGGTTTTCTCACTGAGGATGGCTTATTTGACATGATCCGTGCATCAGGCCAAAAAGCTCCTCCAAGGCAAGATCCTAAAAAATCTGTGGTTAAGTCCTCTGTGGAATCTCCGACAGAGAAAAATTTCCAGAAAGTACAAGCAAAGCCCCGCAAGGATTTGACTGCTAGTGCTTCACCTGCTAAGCAAAAAAGCCGAACAGCTGAATTCTCTAACCTAACATGGACCGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCGCTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACAAAAACTTCCTAGATGTTGGAAGCAAAAAGAAGGTTAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCCGCTAAGTTGGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTAAACGCCAGCGACAATCGAGGTAAATCAGATGCCAAAATTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAACTTATCAGCAATGAATCACTGCACTTCAGAATGGATCAGCCAAAACATCCCAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCAAGCATTAAAATGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAGCTGAAAAGCCTTGTGAACTACTGTCTTATTCTCAGCTTTAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCTATGTCAGTTATTAAATATGATGATATTCGCCAACGGCTTCTGGGCAGTATGAAAGATGAAGACATCTCACCATTCACTGCTGTTGATAAGCTGTTTGGTTTCAATTCTGGGAAGTTAAGGATGGACGAACGGATTGACCTCAGCATGAGTGATCTTGATTTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTACAGGCCAAGCGCTGTTAGTAAGGATGACAATGGGATAAAACGGATGGATTTGATTGCCCGTACAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTGTATTGCTTCTTGTGTAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTGGTGCATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCACGTTCACATTCTTGCTTCTCGCGAATCCTGCTCAGGGAGGGAACACCTAAGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGAGCCACTACACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTGGTCGAATTTATGAGTCTATATTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGTGTAGCCCCCGCAGTGAAAGCTGCTCTGACAAAGGCATACAAAGAAGTAAGCAAGACACACATGGTGCGGGCCGCAGATCTTATTACGCTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCGACTGAGGATGCAGTTGAAGGTGCTGGTGGAGACACATTGGCAGAAAGTGACGACGAAAACTCTTTGGACAATGAGGACGCAGAAGACTCCACAAACGGTGAGAAGCTGCAATTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTGTGGAAAATTCAAGTGCGACGAAATCCGGTGGCAGAGGACGAGGAGGTAGAAGTTCTCAGGCTTCAGAGAAGAAAGGTGGTCGAGGTTCAGAAATGAGACCAAGTCTTCGCCATGGAGCGGTCGACATTTGGGATGATGATTCACCCAACGGACGAGACTGGTTTTTGTAG | 3210 | 43.49 | SKARKLPAIFDQDEPKGIFDFFQSSHSLRNLISFVNRFLFPVTRVSFCEKLPCRFELLHISESERWKFLSRAQSNGELDSGVAFLAFCTPPCILQCGSKKAKPAPSNLEKSASAELQSGKTGPSGGESTGRRITSKYFASEKHKDKDTKETEEPPIKQKSPQDPKESPAKRKFQMDNEGSPKASPLKKSNKIDDNDNDAVFSSSRKNMSEVTPNKKLKSGSGKGITQKPLEIEASDDEETKGTDSSLKPSGRGRGGRGSSAATGGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGQKAPPRQDPKKSVVKSSVESPTEKNFQKVQAKPRKDLTASASPAKQKSRTAEFSNLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNKNFLDVGSKKKVKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFRMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDNGIKRMDLIARTAESIADGDIINVQIRRHRQWQLSQSSCIASCVIPASLLHGQRETLEQGERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHTLPKDEAVKMVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVAPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDAVEGAGGDTLAESDDENSLDNEDAEDSTNGEKLQLELQSLNKKGMQVQLDLKGVENSSATKSGGRGRGGRSSQASEKKGGRGSEMRPSLRHGAVDIWDDDSPNGRDWFL | 1069 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 38880071 | 38893156 | + | CrPI670011_02g025610.1 | Cre02g2561 | 491842 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre02g2561 | 1069 | FunFam | Replication factor C subunit 1 | 694 | 803 | - | - | |
| Cre02g2561 | 1069 | Gene3D | BRCT domain | 273 | 375 | IPR036420 | - | |
| Cre02g2561 | 1069 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 693 | 838 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
| Cre02g2561 | 1069 | Gene3D | - | 694 | 804 | - | - | |
| Cre02g2561 | 1069 | FunFam | Replication factor C subunit 1 | 272 | 375 | - | - | |
| Cre02g2561 | 1069 | MobiDBLite | consensus disorder prediction | 955 | 990 | - | - | |
| Cre02g2561 | 1069 | SMART | AAA_5 | 485 | 623 | IPR003593 | GO:0016887(InterPro) | |
| Cre02g2561 | 1069 | FunFam | Replication factor C subunit 1 | 433 | 621 | - | - | |
| Cre02g2561 | 1069 | CDD | HLD_clamp_RFC | 622 | 680 | IPR047854 | - | |
| Cre02g2561 | 1069 | CDD | BRCT_RFC1 | 296 | 374 | - | - | |
| Cre02g2561 | 1069 | CDD | AAA | 474 | 622 | - | - | |
| Cre02g2561 | 1069 | Pfam | ATPase family associated with various cellular activities (AAA) | 489 | 601 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cre02g2561 | 1069 | MobiDBLite | consensus disorder prediction | 201 | 221 | - | - | |
| Cre02g2561 | 1069 | Gene3D | - | 622 | 692 | - | - | |
| Cre02g2561 | 1069 | MobiDBLite | consensus disorder prediction | 230 | 245 | - | - | |
| Cre02g2561 | 1069 | SUPERFAMILY | BRCT domain | 296 | 375 | IPR036420 | - | |
| Cre02g2561 | 1069 | PIRSF | RFC1 | 95 | 1025 | IPR012178 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro) | |
| Cre02g2561 | 1069 | MobiDBLite | consensus disorder prediction | 110 | 135 | - | - | |
| Cre02g2561 | 1069 | MobiDBLite | consensus disorder prediction | 136 | 177 | - | - | |
| Cre02g2561 | 1069 | ProSiteProfiles | BRCT domain profile. | 296 | 374 | IPR001357 | - | |
| Cre02g2561 | 1069 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 433 | 682 | IPR027417 | - | |
| Cre02g2561 | 1069 | MobiDBLite | consensus disorder prediction | 1051 | 1069 | - | - | |
| Cre02g2561 | 1069 | MobiDBLite | consensus disorder prediction | 99 | 296 | - | - | |
| Cre02g2561 | 1069 | MobiDBLite | consensus disorder prediction | 1010 | 1069 | - | - | |
| Cre02g2561 | 1069 | Pfam | BRCA1 C Terminus (BRCT) domain | 298 | 373 | IPR001357 | - | |
| Cre02g2561 | 1069 | MobiDBLite | consensus disorder prediction | 1031 | 1045 | - | - | |
| Cre02g2561 | 1069 | MobiDBLite | consensus disorder prediction | 280 | 295 | - | - | |
| Cre02g2561 | 1069 | SMART | BRCT_7 | 298 | 376 | IPR001357 | - | |
| Cre02g2561 | 1069 | MobiDBLite | consensus disorder prediction | 377 | 429 | - | - | |
| Cre02g2561 | 1069 | MobiDBLite | consensus disorder prediction | 1010 | 1029 | - | - | |
| Cre02g2561 | 1069 | MobiDBLite | consensus disorder prediction | 969 | 984 | - | - | |
| Cre02g2561 | 1069 | FunFam | Replication factor C subunit 1 | 622 | 693 | - | - | |
| Cre02g2561 | 1069 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 144 | 1000 | - | GO:0003677(PANTHER)|GO:0005634(PANTHER) | |
| Cre02g2561 | 1069 | Pfam | Replication factor RFC1 C terminal domain | 762 | 924 | IPR013725 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro) | |
| Cre02g2561 | 1069 | Gene3D | - | 433 | 621 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre02g2561 | Cre-Chr2:38880071 | Cre05g0437 | Cre-Chr5:3958725 | 4.70E-21 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre02g2561 | K10754 | - | csv:101204361 | 1638.24 |