Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2569 ATGAAATATTGCATTGATGCCGTCGGACTTACAAGATTGGTAATTTTCCTAGCAGCTTTTTCAGCCATCTTCAGCGCATCGCCGCCAGTTCCGACCGAAAAGTCGAAATTAGACAGCTGGTTTTCAGAAAATGTGAAGCCCTTCGCTGATCGTAAGGCGGAGCTTGATCCGGCGCTTGTGACTGCAGAAGAAAACGCCACCGTGGTTAAAGTAAGGGCCGACGGAAGTGGAGATTTCAAGACAATCACCGAAGCCATTAACAGCGTGCCAGCTGGCAACACGAGACGTGTAGTGATTTGGATTGGAGAAGGAGTTTATAAAGAGAAGCTCAAGATTGATAGAAATAAGCCTTTCATTACTCTTTATGGCTCTCCTAATAATATGCCTAAATTGACCTTTGATGGCGATGCTGCCAAATACGGCACCGTTTACAGTGCAACCTTGATTGTTGAGTCTGATTATTTCACCGCCGCCAATCTCATCATTGAGAATTCATCCCCAAGGCCAGATGGGAAAAGAAAAGGAGCACAAGCATTAGCAGCAAGACTGTTAGGGACTAAAGCGGCAGTTTACAATTGCAAATTCTTTGGATTTCAAGATACCCTTTGCGACGACGACGGTTTGCATCTCTACAAAGATTGCTTCATTCAAGGCACCGTCGACTTCATTTTCGGAAAGGGAACATCTCTTTATTTGAATAGTCAATTGGATGTGGTGGGGGACGGAGGATTGGGAGTGATCACGGCCCATTCAAGGGAACAGGAATCAGATGGAAGTGGATATTCGTTCGTTCATTGTAGCATTACGGGAACGGGCGGCAAAAACACTTATTTGGGAAGAGCTTGGATGCCTAGATCTAGGGTTGTCTTCGCCTACACTACAATGGCTGACATCATTCATTCCGAAGGCTGGAATGATATGAACCATGCCGGTTACGATGCTACGGTTTTGTTCGGAGAATACAAGTGTTCGGGGCCAGGATCGGAGCCGAGCGGACGCGTAAAATACAGCAAGCAATTGAGTGATATAGAGGTGAACCCGTTTATTAGTCTTGGTTACGTGCAGAGCGAGAAGTGGTTGCTTCCTCCTCCTAATCCTCAAGCTTAA 1107 45.98 MKYCIDAVGLTRLVIFLAAFSAIFSASPPVPTEKSKLDSWFSENVKPFADRKAELDPALVTAEENATVVKVRADGSGDFKTITEAINSVPAGNTRRVVIWIGEGVYKEKLKIDRNKPFITLYGSPNNMPKLTFDGDAAKYGTVYSATLIVESDYFTAANLIIENSSPRPDGKRKGAQALAARLLGTKAAVYNCKFFGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTSLYLNSQLDVVGDGGLGVITAHSREQESDGSGYSFVHCSITGTGGKNTYLGRAWMPRSRVVFAYTTMADIIHSEGWNDMNHAGYDATVLFGEYKCSGPGSEPSGRVKYSKQLSDIEVNPFISLGYVQSEKWLLPPPNPQA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38959174 38960939 - CrPI670011_02g025690.1 Cre02g2569 491850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2569 368 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Cre02g2569 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 32 360 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cre02g2569 368 SUPERFAMILY Pectin lyase-like 66 361 IPR011050 -
Cre02g2569 368 FunFam Pectinesterase 64 362 - -
Cre02g2569 368 Gene3D - 62 363 IPR012334 -
Cre02g2569 368 Pfam Pectinesterase 69 353 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2569 Cre-Chr2:38959174 Cre02g2573 Cre-Chr2:38974932 3.30E-200 dispersed
Cre02g2569 Cre-Chr2:38959174 Cre02g2572 Cre-Chr2:38968368 1.10E-200 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2569 K01051 - csv:101205095 605.905