Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2572 ATGAAATATTGCATTGATGCCGTCGGACTTACAAGATTGGTAATTTTCCTAGCAGCTTTTTCAGCCATCTTCGGCGCATCGCCGCCGGTTCCGACCGAAAAGTCGAAATTAGACAGCTGGTTTTCAGAAAATGTGAAGCCCTTCGCTGATCGTAAGGCGGAGCTTGATCCGGCGCTTGTGACTGCAGAAGAAAACGCCACCGTGGTTAAAGTAAGGGCCGACGGAAGTGGAGATTTCAAGACAATCACCGAAGCCATTAACAGCGTGCCAGCTGGCAACACGAGACGTGTAGTGATTTGGATTGGAGAAGGAGTTTATAAAGAGAAGCTTAAGATTGATAGAAATAAGCCTTTCGTTACTCTTTATGGCTCTCCTAATAATATGCCTAAATTGACCTTTGATGGCGATGCTGCCAAATACGGCACCGTTTACAGTGCAACCTTGATTGTTGAGTCTGATTATTTCACCGCCGCCAATCTCATCATTGAGAATTCATCCCCAAGGCCAGATGGGAAAAGAAAAGGAGCACAAGCATTAGCAGCAAGACTGTTAGGGACTAAAGCGGCAGTTTACAATTGCAAATTCTTGGGATTTCAAGATACCCTTTGCGACGACGACGGTTTGCATCTCTACAAAGATTGCTTCATTCAAGGCACCGTCGACTTCATTTTCGGAAAGGGAACATCTCTTTATTTGAATAGTCAATTGGATGTGGTGGGAGACGGAGGATTGGGAGTGATCACGGCCCATTCAAGGGAACAGGAATCGGACGGTAGTGGATATTCGTTCGTGCATTGTAGCATTACGGGAACTGGCGGCAAAAACACTTATTTGGGAAGAGCTTGGATGCCCAGATCTAGGGTTGTCTTCGCCTACACTACAATGGCTGACATCATTCATTCCGAAGGCTGGAATGATATGAACCATGCCGGTTACGATGCTACGGTTTTGTTCGGAGAATACAAGTGTTCGGGGCCGGGATCGGAGCCGAGCGGACGCGTAAAATACAGCAAGCAATTGAGTGATATAGAGCACCATCCGTCCCCAAGGCCAGATGGGAAAAGAAAAGGAGCACAAACATTAGCAGCAAGACTGTTAGGGACTAAAGCGGCAGTTTACAATTGCAAATTCTTTGGATTTCAAGATACCCTTTGTGACGACGACGGTTTGCATCTCTACAAAGATTGCTTCATTCAAGGCACCGTCGACTTCATTTTCGGAAAGGGAACATCTCTTTATTTGAATAGTCAATTGGATGTGGTGGGAGACGGAGGATTGGGAGTGATCACGGCCCATTCAAGGGAACACGAATCGGACGGTTGTGGATATTCGTTCGTGCATTGTAGCATTACGGGAACTGGCAGCAAAAACACTTATTTGGGAAGAGCTTGGATGCCCAGGTCTAGGGTTGTCTTCGCCTACACTACAATGGCTGACATCATTCATTCCGAAGGCTGGAACGATATGAACCATGCCAGTTACGATGCCACGGTTTTGTTCGGAGAATATAAGTGTTCGGGACCGGGATCGAAGCCGAGTGGGTGCGTAAAATACAGCAAGCAATTGTGTGATGTAGAAGTGAAACCGTTCATTAGTTTTGGTCACGTGCAGAGCGAGAAGTGGCTACTTCCTCCTCCCAATCCTCAAGCTTAA 1653 46.64 MKYCIDAVGLTRLVIFLAAFSAIFGASPPVPTEKSKLDSWFSENVKPFADRKAELDPALVTAEENATVVKVRADGSGDFKTITEAINSVPAGNTRRVVIWIGEGVYKEKLKIDRNKPFVTLYGSPNNMPKLTFDGDAAKYGTVYSATLIVESDYFTAANLIIENSSPRPDGKRKGAQALAARLLGTKAAVYNCKFLGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTSLYLNSQLDVVGDGGLGVITAHSREQESDGSGYSFVHCSITGTGGKNTYLGRAWMPRSRVVFAYTTMADIIHSEGWNDMNHAGYDATVLFGEYKCSGPGSEPSGRVKYSKQLSDIEHHPSPRPDGKRKGAQTLAARLLGTKAAVYNCKFFGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTSLYLNSQLDVVGDGGLGVITAHSREHESDGCGYSFVHCSITGTGSKNTYLGRAWMPRSRVVFAYTTMADIIHSEGWNDMNHASYDATVLFGEYKCSGPGSKPSGCVKYSKQLCDVEVKPFISFGHVQSEKWLLPPPNPQA 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38968368 38971812 - CrPI670011_02g025720.1 Cre02g2572 491853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2572 550 Gene3D - 349 544 IPR012334 -
Cre02g2572 550 Gene3D - 62 348 IPR012334 -
Cre02g2572 550 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Cre02g2572 550 SUPERFAMILY Pectin lyase-like 66 344 IPR011050 -
Cre02g2572 550 SUPERFAMILY Pectin lyase-like 356 543 IPR011050 -
Cre02g2572 550 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Cre02g2572 550 Pfam Pectinesterase 69 337 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre02g2572 550 Pfam Pectinesterase 358 520 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre02g2572 550 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 47 345 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cre02g2572 550 FunFam Pectinesterase 64 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2572 Cre-Chr2:38968368 Cre03g1755 Cre-Chr3:34361313 9.90E-100 dispersed
Cre02g2569 Cre-Chr2:38959174 Cre02g2572 Cre-Chr2:38968368 1.10E-200 proximal
Cre02g2572 Cre-Chr2:38968368 Cre02g2573 Cre-Chr2:38974932 6.90E-202 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2572 K01051 - csv:101205095 580.867