Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2573 ATGAAATATTGCATTGATGCCGTCGGACTTACAAGATTGGTTATTTTCCTAGCAGCTTTTTCAGCCATCTTCGGCGCATCGCCGCCGGTTCCGACCGAAAAGTCGAAATTAGACAGCTGGTTTTCAGAAAATGTGAAGCCCTTCGCTGATCGTAAGGCGGAGCTTGATCCGGCGCTTGTGACTGCAGAAGAAAACGCCACCGTGGTTAAAGTAAGGGCCGACGGAAGTGGAGATTTCAAGACAATCACCGAAGCCATTAACAGCGTGCCAGCTGGCAACACGAGACGTGTAGTGATTTGGATTGGAGAAGGAGTTTATAAAGAGAAGCTTAAGATTGATAGAAATAAGCCTTTCGTTACTCTTTATGGCTCTCCTAATAATATGCCTAAATTGACCTTTGATGGCGATGCTGCCAAATACGGCACCGTTTACAGTGCAACCTTGATTGTTGAGTCTGATTATTTCACCGCCGCCAATCTCATCATTGAGAATTCATCCCCAAGGCCAGATGGGAAAAGAAAAGGAGCACAAGCATTAGCAGCAAGACTGTTAGGAACTAAAGCGGCAGTTTACAATTGCAAATTCTTGGGATTTCAAGATACCCTTTGCGACGACGACGGTTTGCATCTCTACAAAGATTGCTTCATTCAAGGCACCGTCGACTTCATTTTCGGAAAGGGAACATCTCTTTATTTGAATAGTCAATTGGATGTGGTGGGAGACGGAGGATTGGGAGTGATCACGGCCCATTCAAGGGAACAGGAATCGGACGGTAGTGGATATTCGTTCGTGCATTGTAGCATTACGGGAACTGGCGGCAAAAACACTTATTTGGGAAGAGCTTGGATGCCCAGATCTAGGGTTGTCTTCGCCTACACTACAATGGCTGACATCATTCATTCCGAAGGCTGGAATGATATGAACCATGCCGGTTACGATGCTACGGTTTTGTTCGGAGAATACAAGTGTTCGGGGCCGGGATCGGAGCCGAGCGGACGCGTAAAATACAGCAAGCAATTGAGTGATATAGAGAATCGTGACTTGAGAGTATCGCGACCCTCACTTTCCGGCGAGCTGACACCTGATCCGTCGTTATCTTCTCCAGCGCCGGCGATATCAGGTCGTCACTTCTACTCCTCCATTCCCCCATCCTTCCCTTCAAACCCTAACCCTGATTTCGCTCTCACCGGGAGAATCTCCGACCCGAAAACCTCTGGTTTCACTCTAATCGTGAAGGTTCTTGCTTACAATCGCCTCGATTCCGTGTCCCGCTGCCTTCGGTCCATCGCCAATGCGGATTACCTCTCTGACCGCGTCCATCTCCATGTCTACATTGATCATTTTCCTCACGATGATGCTCATATCAAGCTCAACGAGTCGCATCGGATCTTGCAATTCGTTGATCAGTTTGTTTGGAATTTTGGGGAAAAGCTAGTGCATTATCGAACGGGGAACGTGGGTTTGCAAGCGCAGTGGTTGGAGGCTTGGTGGCCGAGCTCTGACAATGAGTTTGCATTCGTTGTGGAGGATGATCTGGAGTTGTCGCCGCTTTATTATAAATTCCTGAGGAGTTTAATTCTGAATTATTATTATAATACTTCGAATTATGCTCCCTCGATATACGGGGCTTCGCTGCAGCGACCAAGGTTTGTTCCAGGTAAACATGGTAATAAAATAAGACTGGATGAAGGAACCAGAACTTTTTTGTACCAAATAGTTGGCACTTGGGGTCAGCTTCTCTTTCCAAGGCCTTGGAAGGAGTTTAGATTGTGGTATGATGAGCACAAGGCGATGGGCATCAAGCCAATACTTGATGGCATGGTGACGACAGGATGGTACAAGAAGCTGGGTGAAAGAATATGGACTCCTTGGTTTATTAAATTTATCCATTCTCGTGGCTATTTCAATATCTACACCAATTTCTTACATGAAAGAGCATTGAGTACTTCTCACAGGGATGCTGGTGTCAATTATGGGAAAACAGCTGGTCCTGATTCACACTTACTGGATGAAAGTTCACTCGATTTTAATCTCCTAGAGATGAAGCCTCTTACCAATCTGAAGTGGTATGATTTCTGCTTTAGAGAAGTAATTCCTCAAAGAATTGTTAAAAGCAAGAGTGAGCTTGTTTCTGTTCTTCACTCTGTTCAGAAACACAAAAACATAATCATAGTGAGTATATTTGGGGTTTCAGAGTCCACGATGAGGAATTTCCTTTGCCACTTTGATAGGTTGAACATAAAGAACTATATTTTGTTGGGCCATGAATCTGAGTTACTCAATGATCTAACTAGAAGAGGACACCCAGTAATTTATGCAGACCATTTTCTGAAGACTGTCAAAACTTTCAAATTTACAACTTTTGAAGGCACCACCTCTTCAGAACTGGTGAAGGTAGTTCTAGCAAAGTTCTACATTAGTAAGTCATGCTTAGAACTTGGGTACAATCCTGTGTTGGTAGATGGAAACATGCTTTTTGTCAATGGTGATCCATTCACAGACTTAAGTCTTGCTGACAATGTTGTTTCCGGGCAGAGCTTTGAACTTTTCTTCATTAAAAGCTCGTCCTCTGCTCAAAAGATGTGGACTAGTCACATGGTCGTCGAGGCCGAAGCCATGGTAGAGTCTTTGATGAGTAGAGGTTCCTCATCAAGAGATGGCATTAGTTTTGTAGGCATAGCAACTAAAGTATTAGAACAACATGGTGTTAAGTTCAAGACAGCTGAGGAGATGAGTTTTGGTGTGAATATTGGTAACAATCCTTCCAACACATCATTAGGTGATGGGAAAAGGTTGGTGTTTTGGCCAGTTGATATGGATATTAATGACGTACAAAAACGGCTCGAGGAGTTGGGTTTTTGGATTATTGATGCTGATCTTTCTTGCAAAGCTGTTTATTGTAATGGATTGTAG 2913 44.04 MKYCIDAVGLTRLVIFLAAFSAIFGASPPVPTEKSKLDSWFSENVKPFADRKAELDPALVTAEENATVVKVRADGSGDFKTITEAINSVPAGNTRRVVIWIGEGVYKEKLKIDRNKPFVTLYGSPNNMPKLTFDGDAAKYGTVYSATLIVESDYFTAANLIIENSSPRPDGKRKGAQALAARLLGTKAAVYNCKFLGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTSLYLNSQLDVVGDGGLGVITAHSREQESDGSGYSFVHCSITGTGGKNTYLGRAWMPRSRVVFAYTTMADIIHSEGWNDMNHAGYDATVLFGEYKCSGPGSEPSGRVKYSKQLSDIENRDLRVSRPSLSGELTPDPSLSSPAPAISGRHFYSSIPPSFPSNPNPDFALTGRISDPKTSGFTLIVKVLAYNRLDSVSRCLRSIANADYLSDRVHLHVYIDHFPHDDAHIKLNESHRILQFVDQFVWNFGEKLVHYRTGNVGLQAQWLEAWWPSSDNEFAFVVEDDLELSPLYYKFLRSLILNYYYNTSNYAPSIYGASLQRPRFVPGKHGNKIRLDEGTRTFLYQIVGTWGQLLFPRPWKEFRLWYDEHKAMGIKPILDGMVTTGWYKKLGERIWTPWFIKFIHSRGYFNIYTNFLHERALSTSHRDAGVNYGKTAGPDSHLLDESSLDFNLLEMKPLTNLKWYDFCFREVIPQRIVKSKSELVSVLHSVQKHKNIIIVSIFGVSESTMRNFLCHFDRLNIKNYILLGHESELLNDLTRRGHPVIYADHFLKTVKTFKFTTFEGTTSSELVKVVLAKFYISKSCLELGYNPVLVDGNMLFVNGDPFTDLSLADNVVSGQSFELFFIKSSSSAQKMWTSHMVVEAEAMVESLMSRGSSSRDGISFVGIATKVLEQHGVKFKTAEEMSFGVNIGNNPSNTSLGDGKRLVFWPVDMDINDVQKRLEELGFWIIDADLSCKAVYCNGL 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38974932 38982259 + CrPI670011_02g025730.1 Cre02g2573 491854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2573 970 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Cre02g2573 970 PANTHER OSJNBA0004B13.7 PROTEIN 408 964 - -
Cre02g2573 970 SUPERFAMILY Nucleotide-diphospho-sugar transferases 411 657 IPR029044 -
Cre02g2573 970 Gene3D - 63 354 IPR012334 -
Cre02g2573 970 SUPERFAMILY Pectin lyase-like 66 344 IPR011050 -
Cre02g2573 970 FunFam Pectinesterase 64 352 - -
Cre02g2573 970 Pfam Pectinesterase 69 338 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre02g2573 970 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 410 661 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1230 Cre-Chr1:25391922 Cre02g2573 Cre-Chr2:38974932 1.10E-26 dispersed
Cre02g2569 Cre-Chr2:38959174 Cre02g2573 Cre-Chr2:38974932 3.30E-200 dispersed
Cre02g2573 Cre-Chr2:38974932 Cre03g1755 Cre-Chr3:34361313 1.00E-99 dispersed
Cre02g2572 Cre-Chr2:38968368 Cre02g2573 Cre-Chr2:38974932 6.90E-202 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2573 - - - 0.0