Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2575 ATGGAACAAACAAAGTACAGAGCCGATCTTCTTTCATCCCTCTTCCTTGTCCTCATCCTTTTACTCTCCCTTTCCGGCCGATCCGCCGTTCATGCCTACAAGAACTACACCGTCGGAGATTCCCTCGGTTGGTTCGACAAATTGGAGAAACCTGCCGTCGATTACCAAGAATGGACCGCTGGCAAGACCTTCGGCCTCGGCGATTTTCTAATTTTTAACACGGACAACAATCACTCGGTTGTGCAAACATACAATTTCACCACATACAAGCTTTGTGACTACGACGACGCGTCGGAAAACGACACGACGGAATGGTCTGCCGCCGACCCGTCGGCGACCACTCCCTACGCCGTGACCGTGGCCGTCCCATTGGTGAAAGAAGGGACCAACTATTTCTTCTCCGGCAACTACGACGGAGAGCAATGCCAAAATGGCCAACAATTCAAAATAAACGTCACCCATGGACAAGGCCTCCCAAAAAGCATGAGAGATTCTTCCGACGAAGCTCCGGCTCCAGTAGTTCCCGACACCGGTGACCAAACCGAAGCTGCACCCGACACCATTGTCCCTTCCAGCTTCGACAATCCTCGAAACGACGTCGCTGATAGCGACAAGGAAGCTTCAGGCTCCGACTCGTTATCGCTTTGCATCAAGTTTAATGAGCTCTTCTTCTTGTTAGCTGGTATTGTTTCTGCCTGCTTTTTTCTTTGTACTGAGTGA 720 50.69 MEQTKYRADLLSSLFLVLILLLSLSGRSAVHAYKNYTVGDSLGWFDKLEKPAVDYQEWTAGKTFGLGDFLIFNTDNNHSVVQTYNFTTYKLCDYDDASENDTTEWSAADPSATTPYAVTVAVPLVKEGTNYFFSGNYDGEQCQNGQQFKINVTHGQGLPKSMRDSSDEAPAPVVPDTGDQTEAAPDTIVPSSFDNPRNDVADSDKEASGSDSLSLCIKFNELFFLLAGIVSACFFLCTE 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38993189 38997259 + CrPI670011_02g025750.1 Cre02g2575 491856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2575 239 Gene3D - 33 157 IPR008972 -
Cre02g2575 239 FunFam Early nodulin-like protein 18 33 155 - -
Cre02g2575 239 Pfam Plastocyanin-like domain 46 146 IPR003245 GO:0009055(InterPro)
Cre02g2575 239 SUPERFAMILY Cupredoxins 34 152 IPR008972 -
Cre02g2575 239 ProSiteProfiles Phytocyanin domain profile. 34 154 IPR003245 GO:0009055(InterPro)
Cre02g2575 239 PANTHER BLUE COPPER PROTEIN 21 166 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cre02g2575 239 MobiDBLite consensus disorder prediction 156 210 - -
Cre02g2575 239 CDD Phytocyanin 34 152 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2575 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2575 Cre-Chr2:38993189 Cre06g0805 Cre-Chr6:1404878 3.50E-33 dispersed
Cre02g2575 Cre-Chr2:38993189 Cre08g1069 Cre-Chr8:23807903 7.50E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g956 . . . . . . . . . . . . . . . Cpe05g00463 . . . . . . . . Cla02g02197 Cam02g2342 Cec02g2381 Cco02g2423 Clacu02g2315 Cmu02g2248 Cre02g2575 . Cone5ag1429 . . . Csa06g02492 Chy05g00185 Cme05g00219 . . . . . . . . . . Cmo20g00135 . Cma20g00126 . Car20g00109 Cpe16g00842 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1683 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 2.5e-38 155.6
Cre08g1316 . 7 169 Phytocyanin Superfamily AT2G25060 54.9 5.2e-45 177.9
Cre10g1683 . 12 178 Phytocyanin Superfamily AT5G15350 52.7 4.0e-47 184.9
Cre08g1316 . 16 171 Phytocyanin Superfamily AT4G31840 55.1 2.3e-45 179.1
Cre01g1475 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 7.0e-37 151.0
Cre01g1475 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 7.0e-37 151.0
Cre08g1316 . 9 176 Phytocyanin Superfamily AT5G25090 52.0 2.5e-39 159.1
Cre08g1316 . 7 169 Phytocyanin Superfamily AT2G25060 54.9 5.2e-45 177.9
Cre08g1316 . 16 171 Phytocyanin Superfamily AT4G31840 55.1 2.3e-45 179.1
Cre10g1683 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 2.5e-38 155.6
Cre10g1683 . 12 178 Phytocyanin Superfamily AT5G15350 52.7 4.0e-47 184.9
Cre02g2575 . 11 229 Phytocyanin Superfamily AT1G08500 56.8 6.2e-64 241.1
Cre03g1684 . 29 135 Phytocyanin Superfamily AT2G27035 59.8 7.2e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26