Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2593 ATGTCTTCTTCCGGAATCTCTACCCAAAGCGCCGAATTGTCAGATGCCGTTCAAGAACTAGTAATTTGCGAGCAGTTGGAAATGGGAAAGAAGGTAGAGATTCAAGGAACGGGGAATGGGAGTCATGATGGGGCTTGTGCAATTTGCTTAAATAAGATAGCACTTCAAGAAACTGCTTTAGTGAGAGGCTGCGAGCACGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATACACTCAGAAACCGACTTGTCCACAATGTAAACATCCATTTGAGTTCCTGATCGTTCATCGTTCTCTTGATGGGAGCATCCATGACTATATGTTCGAGGAGAGTGTATGCCTGCTTTTGAGAGCTTCGTGGTACAAACCACTGATCGTTGAAGAGCGGGAGGAAACCTATGATGATCCTGAGGACGATCAATACTATCCTTATGATCCTTATGAGGATGACAATGAAGAGTTTGAGGATGCTTACCTGGGTGTACCACCAAGTCTCCGTATCGGAAATCGAAGGTGGGGAGACAATGGATACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTCTTAGGTCTGAGTTTGCTGGACCTAGTTCATCGAGGGAGCCTGTAACGAAACATGCTTCCAAAGATAAAACAGGTCGACGAGCTAAAAGGGCCCTGAAACGGGAAGCTGCTGATAAAGCAGCAGCAGCTAAGCATCAAGAACATCTGGCTAGGATATGGGAACTGAAAGAAAGGCAAAGAAAAGAAGACCAACAGCAACGACTTGCTGTAACTGTAAGGGGAAGTCTTTTGCCTTTTGATGTCTTTCAATATGGGTTGGTGGCTAAAACTGCTGTTGCTTTATCACCAGCTTCCCGTTTCGAGGGCCTTTTAGCTTGTCAACCTGTTTTATCTTTGGAAGCATGTTTCGTTATAGCCTCCCTTGATGAACTAGCTCCAGCAAATTCAGGCCTAAGAATTGGTTGGGCTTCTTGTCGACCTGCCCTCACGTATCCATTGTCTCCCCCACCTTCGAGTGCTGATTCAGAGATCTGA 1044 46.65 MSSSGISTQSAELSDAVQELVICEQLEMGKKVEIQGTGNGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIVEEREETYDDPEDDQYYPYDPYEDDNEEFEDAYLGVPPSLRIGNRRWGDNGYVRAGRQEARPVLRSEFAGPSSSREPVTKHASKDKTGRRAKRALKREAADKAAAAKHQEHLARIWELKERQRKEDQQQRLAVTVRGSLLPFDVFQYGLVAKTAVALSPASRFEGLLACQPVLSLEACFVIASLDELAPANSGLRIGWASCRPALTYPLSPPPSSADSEI 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39174827 39180054 - CrPI670011_02g025930.1 Cre02g2593 491874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2593 347 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Cre02g2593 347 SMART ring_2 46 88 IPR001841 -
Cre02g2593 347 MobiDBLite consensus disorder prediction 190 227 - -
Cre02g2593 347 CDD RING-HC_Topors 43 92 - -
Cre02g2593 347 Pfam Ring finger domain 45 89 IPR001841 -
Cre02g2593 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 111 IPR013083 -
Cre02g2593 347 ProSiteProfiles Zinc finger RING-type profile. 46 89 IPR001841 -
Cre02g2593 347 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 242 - -
Cre02g2593 347 SUPERFAMILY RING/U-box 45 96 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2593 - - - 0.0