Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2617 ATGCGGTCCCCACTTTTGCGCCAAGCGTTTCCCGGACTTTGCTCGTCAATGGGTGAAGGAACAGTAGCCGTAGCTCTTGAATTTGAGTTCCCAAAAGGGTCGTTGCTTTACTCCAATTACTGTGCTCTCTCACGGTTGTTTCCTGAATCTAGGGCTTTGGATTTCCAGAATTTTCCATCCAAATCGAACTTGCGCCGTGCTATTCTGTTTTGCTCCTTCGAATTGAAATCTATCCAACTTTTTGGGTATTGGGTTCTGTTTGTTGTCTGCATGTGGGGGATTATGGCTTTATTTTGCCTAGTTGGGCTTCGGGTTCCAACTAGAGAAAGGGTTCCAACTAGGAGAAGTCCTGAAGAAATTAAAGTTGTAGAGCATTTTACTTCCAAGGAAGTGATAAGCCTCATTCAAGCGAACAATGAGCAATGCTCTGCACAAGGATTGGATACAGTCAAATCAAAGTCTAAAAGTGTGAATCATCTAGGATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCATATCTCCCCGCCACCAGCAGGAGGGAATGTGTCCAATTCAACATCACTGGAATGTACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCGATGTCAAATGATGATTTAAATGAAGACGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCTCCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCACGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGTGGACGATTTGCCAAGAAAAATGAAGCTAATTCCTCGAGTTCTACTCTGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCGTCGCACTCTGCTGGTTCATCTGGTTCTGAAGCAGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGAAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATGTGAACGGCAGTAGCCAATTCCATAATTACAGTAGCTTCCAAGCTTCTCCGTATGGTTTACGGTCTGGTGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAGCGAAGTGTCTCAGAAAATCAGGCTGCACAGAGGCGTCTTGCCATCAAGTGA 1473 45.76 MRSPLLRQAFPGLCSSMGEGTVAVALEFEFPKGSLLYSNYCALSRLFPESRALDFQNFPSKSNLRRAILFCSFELKSIQLFGYWVLFVVCMWGIMALFCLVGLRVPTRERVPTRRSPEEIKVVEHFTSKEVISLIQANNEQCSAQGLDTVKSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVSAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNYSSFQASPYGLRSGERGEDGDCSGQQRSVSENQAAQRRLAIK 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39436827 39442207 - CrPI670011_02g026170.1 Cre02g2617 491898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2617 490 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 317 372 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2617 490 MobiDBLite consensus disorder prediction 353 369 - -
Cre02g2617 490 SMART cbf3 314 375 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2617 490 Gene3D - 315 377 - -
Cre02g2617 490 PRINTS CCAAT-binding transcription factor subunit B signature 349 372 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2617 490 PRINTS CCAAT-binding transcription factor subunit B signature 318 340 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2617 490 MobiDBLite consensus disorder prediction 189 235 - -
Cre02g2617 490 MobiDBLite consensus disorder prediction 190 217 - -
Cre02g2617 490 ProSiteProfiles NF-YA/HAP2 family profile. 315 375 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2617 490 MobiDBLite consensus disorder prediction 450 490 - -
Cre02g2617 490 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 168 432 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cre02g2617 490 MobiDBLite consensus disorder prediction 351 409 - -
Cre02g2617 490 MobiDBLite consensus disorder prediction 153 173 - -
Cre02g2617 490 ProSitePatterns NF-YA/HAP2 subunit signature. 320 340 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cre02g2617 490 MobiDBLite consensus disorder prediction 374 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2617 Cre-Chr2:39436827 Cre04g2118 Cre-Chr4:38430715 5.80E-27 dispersed
Cre02g2617 Cre-Chr2:39436827 Cre03g1600 Cre-Chr3:31759510 2.40E-73 wgd
Cre02g2617 Cre-Chr2:39436827 Cre09g0391 Cre-Chr9:3845871 5.40E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53261 PF02045 CBFB_NFYA 3.20E-26 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2617 K08064 - csv:101212961 620.928