Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre02g2617 | ATGCGGTCCCCACTTTTGCGCCAAGCGTTTCCCGGACTTTGCTCGTCAATGGGTGAAGGAACAGTAGCCGTAGCTCTTGAATTTGAGTTCCCAAAAGGGTCGTTGCTTTACTCCAATTACTGTGCTCTCTCACGGTTGTTTCCTGAATCTAGGGCTTTGGATTTCCAGAATTTTCCATCCAAATCGAACTTGCGCCGTGCTATTCTGTTTTGCTCCTTCGAATTGAAATCTATCCAACTTTTTGGGTATTGGGTTCTGTTTGTTGTCTGCATGTGGGGGATTATGGCTTTATTTTGCCTAGTTGGGCTTCGGGTTCCAACTAGAGAAAGGGTTCCAACTAGGAGAAGTCCTGAAGAAATTAAAGTTGTAGAGCATTTTACTTCCAAGGAAGTGATAAGCCTCATTCAAGCGAACAATGAGCAATGCTCTGCACAAGGATTGGATACAGTCAAATCAAAGTCTAAAAGTGTGAATCATCTAGGATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCATATCTCCCCGCCACCAGCAGGAGGGAATGTGTCCAATTCAACATCACTGGAATGTACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCGATGTCAAATGATGATTTAAATGAAGACGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCTCCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCACGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGTGGACGATTTGCCAAGAAAAATGAAGCTAATTCCTCGAGTTCTACTCTGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCGTCGCACTCTGCTGGTTCATCTGGTTCTGAAGCAGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGAAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATGTGAACGGCAGTAGCCAATTCCATAATTACAGTAGCTTCCAAGCTTCTCCGTATGGTTTACGGTCTGGTGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAGCGAAGTGTCTCAGAAAATCAGGCTGCACAGAGGCGTCTTGCCATCAAGTGA | 1473 | 45.76 | MRSPLLRQAFPGLCSSMGEGTVAVALEFEFPKGSLLYSNYCALSRLFPESRALDFQNFPSKSNLRRAILFCSFELKSIQLFGYWVLFVVCMWGIMALFCLVGLRVPTRERVPTRRSPEEIKVVEHFTSKEVISLIQANNEQCSAQGLDTVKSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVSAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNYSSFQASPYGLRSGERGEDGDCSGQQRSVSENQAAQRRLAIK | 490 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 39436827 | 39442207 | - | CrPI670011_02g026170.1 | Cre02g2617 | 491898 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre02g2617 | 490 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 317 | 372 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2617 | 490 | MobiDBLite | consensus disorder prediction | 353 | 369 | - | - | |
Cre02g2617 | 490 | SMART | cbf3 | 314 | 375 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2617 | 490 | Gene3D | - | 315 | 377 | - | - | |
Cre02g2617 | 490 | PRINTS | CCAAT-binding transcription factor subunit B signature | 349 | 372 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2617 | 490 | PRINTS | CCAAT-binding transcription factor subunit B signature | 318 | 340 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2617 | 490 | MobiDBLite | consensus disorder prediction | 189 | 235 | - | - | |
Cre02g2617 | 490 | MobiDBLite | consensus disorder prediction | 190 | 217 | - | - | |
Cre02g2617 | 490 | ProSiteProfiles | NF-YA/HAP2 family profile. | 315 | 375 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre02g2617 | 490 | MobiDBLite | consensus disorder prediction | 450 | 490 | - | - | |
Cre02g2617 | 490 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 168 | 432 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cre02g2617 | 490 | MobiDBLite | consensus disorder prediction | 351 | 409 | - | - | |
Cre02g2617 | 490 | MobiDBLite | consensus disorder prediction | 153 | 173 | - | - | |
Cre02g2617 | 490 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 320 | 340 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
Cre02g2617 | 490 | MobiDBLite | consensus disorder prediction | 374 | 405 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2617 | Cre-Chr2:39436827 | Cre04g2118 | Cre-Chr4:38430715 | 5.80E-27 | dispersed | |
Cre02g2617 | Cre-Chr2:39436827 | Cre03g1600 | Cre-Chr3:31759510 | 2.40E-73 | wgd | |
Cre02g2617 | Cre-Chr2:39436827 | Cre09g0391 | Cre-Chr9:3845871 | 5.40E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53261 | PF02045 | CBFB_NFYA | 3.20E-26 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre02g2617 | K08064 | - | csv:101212961 | 620.928 |