Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre02g2617 ATGCGGTCCCCACTTTTGCGCCAAGCGTTTCCCGGACTTTGCTCGTCAATGGGTGAAGGAACAGTAGCCGTAGCTCTTGAATTTGAGTTCCCAAAAGGGTCGTTGCTTTACTCCAATTACTGTGCTCTCTCACGGTTGTTTCCTGAATCTAGGGCTTTGGATTTCCAGAATTTTCCATCCAAATCGAACTTGCGCCGTGCTATTCTGTTTTGCTCCTTCGAATTGAAATCTATCCAACTTTTTGGGTATTGGGTTCTGTTTGTTGTCTGCATGTGGGGGATTATGGCTTTATTTTGCCTAGTTGGGCTTCGGGTTCCAACTAGAGAAAGGGTTCCAACTAGGAGAAGTCCTGAAGAAATTAAAGTTGTAGAGCATTTTACTTCCAAGGAAGTGATAAGCCTCATTCAAGCGAACAATGAGCAATGCTCTGCACAAGGATTGGATACAGTCAAATCAAAGTCTAAAAGTGTGAATCATCTAGGATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCATATCTCCCCGCCACCAGCAGGAGGGAATGTGTCCAATTCAACATCACTGGAATGTACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCGATGTCAAATGATGATTTAAATGAAGACGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCTCCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCACGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGTGGACGATTTGCCAAGAAAAATGAAGCTAATTCCTCGAGTTCTACTCTGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCGTCGCACTCTGCTGGTTCATCTGGTTCTGAAGCAGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGAAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATGTGAACGGCAGTAGCCAATTCCATAATTACAGTAGCTTCCAAGCTTCTCCGTATGGTTTACGGTCTGGTGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAGCGAAGTGTCTCAGAAAATCAGGCTGCACAGAGGCGTCTTGCCATCAAGTGA 1473 45.76 MRSPLLRQAFPGLCSSMGEGTVAVALEFEFPKGSLLYSNYCALSRLFPESRALDFQNFPSKSNLRRAILFCSFELKSIQLFGYWVLFVVCMWGIMALFCLVGLRVPTRERVPTRRSPEEIKVVEHFTSKEVISLIQANNEQCSAQGLDTVKSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVSAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNYSSFQASPYGLRSGERGEDGDCSGQQRSVSENQAAQRRLAIK 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39436827 39442207 - CrPI670011_02g026170.1 Cre02g2617 491898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre02g2617 490 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 317 372 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2617 490 MobiDBLite consensus disorder prediction 353 369 - -
Cre02g2617 490 SMART cbf3 314 375 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2617 490 Gene3D - 315 377 - -
Cre02g2617 490 PRINTS CCAAT-binding transcription factor subunit B signature 349 372 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2617 490 PRINTS CCAAT-binding transcription factor subunit B signature 318 340 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2617 490 MobiDBLite consensus disorder prediction 189 235 - -
Cre02g2617 490 MobiDBLite consensus disorder prediction 190 217 - -
Cre02g2617 490 ProSiteProfiles NF-YA/HAP2 family profile. 315 375 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre02g2617 490 MobiDBLite consensus disorder prediction 450 490 - -
Cre02g2617 490 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 168 432 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cre02g2617 490 MobiDBLite consensus disorder prediction 351 409 - -
Cre02g2617 490 MobiDBLite consensus disorder prediction 153 173 - -
Cre02g2617 490 ProSitePatterns NF-YA/HAP2 subunit signature. 320 340 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cre02g2617 490 MobiDBLite consensus disorder prediction 374 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre02g2617 K08064 - - csv:101212961 620.928
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2617 Cre-Chr2:39436827 Cre04g2118 Cre-Chr4:38430715 5.80E-27 dispersed
Cre02g2617 Cre-Chr2:39436827 Cre03g1600 Cre-Chr3:31759510 2.40E-73 wgd
Cre02g2617 Cre-Chr2:39436827 Cre09g0391 Cre-Chr9:3845871 5.40E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g216 Blo03g00980 Blo03g01379 . . Bpe01g00318 Bpe08g01208 Bma14g00770 Bma07g01396 Cmo10g00972 Cmo11g00859 Cma10g00928 . . . Sed08g1078 Cpe05g00493 Cpe18g00169 Bhi02g01538 Tan09g0832 Cmetu02g0337 . Hepe09g1122 . . Cla02g02245 Cam02g2393 Cec02g2427 Cco02g2469 Clacu02g2363 Cmu02g2297 Cre02g2617 . Cone5ag1448 Cone18ag0101 Cone11ag1494 Lsi06g00527 Csa06g02549 Chy05g00137 Cme05g00165 Blo08g00103 Blo14g00284 . Bda09g00320 Bpe08g00276 Bpe11g00922 Bma07g00265 Bma11g00292 . Cmo02g01293 Cmo20g00092 Cma11g00848 Cma20g00089 Car02g01043 Car20g00071 Cpe16g00877 Cpe04g00917 Bhi10g00303 . . . . . . Cla03g01271 Cam03g1337 Cec03g1373 Cco03g1365 Clacu03g1359 Cmu03g1930 Cre03g1600 . . Chy02g01451 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre02g2617 . 167 420 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.2 9.1e-54 207.6
Cre03g1600 . 58 231 CCAAT-HAP2 Transcription Factor Family AT3G20910 61.4 5.9e-46 181.8
Cre04g2118 . 17 193 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.2 1.3e-46 183.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53261 PF02045 CBFB_NFYA 3.20E-26 No_clan Cre TF